View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9359_low_64 (Length: 244)

Name: NF9359_low_64
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9359_low_64
NF9359_low_64
[»] chr8 (2 HSPs)
chr8 (17-102)||(5662757-5662842)
chr8 (175-232)||(5662913-5662970)
[»] scaffold0003 (2 HSPs)
scaffold0003 (17-98)||(36796-36877)
scaffold0003 (17-102)||(42974-43061)
[»] chr3 (5 HSPs)
chr3 (17-102)||(31688055-31688140)
chr3 (17-102)||(31896727-31896812)
chr3 (17-102)||(31912436-31912521)
chr3 (17-102)||(31946084-31946169)
chr3 (203-232)||(52131183-52131212)
[»] chr7 (3 HSPs)
chr7 (179-232)||(11649352-11649405)
chr7 (54-102)||(11649475-11649523)
chr7 (198-238)||(22007561-22007601)
[»] chr6 (1 HSPs)
chr6 (17-102)||(27444300-27444387)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 5662757 - 5662842
Alignment:
Q  17 cattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5662757 cattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa 5662842  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 5662913 - 5662970
Alignment:
Q  175 cgcacaccgtccactccccctttctctataaatcgtgattcttccacttcttcctctc 232  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5662913 cgcacaccgtccactccccctttctctgtaaatcgtgattcttccacttcttcctctc 5662970  T

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Target: scaffold0003 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 36877 - 36796
Alignment:
Q  17 cattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgac 98  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||  ||| |||||||||||    
T  36877 cattgtaaatgacaaataattaatgttatcggtttccaatacagtgttgcatatccatctcattggaaacaatggctctgac 36796  T

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Target: scaffold0003; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 43061 - 42974
Alignment:
Q  17 cattgtaaat-gacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcg-aaccatggctctgacctaa 102  Q
    |||||||||| |||||| | ||||||||| | ||||  ||||||||||||||||||||| |||||| | ||| |||||||||||||||    
T  43061 cattgtaaattgacaaatagttaatgttatcggttttgaatacagtgttgcatatccatttcattgggaaacaatggctctgacctaa 42974  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 31688055 - 31688140
Alignment:
Q  17 cattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa 102  Q
    |||||||||||||||| ||||||||||| | |||||||||| |||||||||||||||||| ||||  ||| |||||||||||||||    
T  31688055 cattgtaaatgacaaataattaatgttatcggtttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaa 31688140  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 31896812 - 31896727
Alignment:
Q  17 cattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa 102  Q
    |||||||||||||||| ||||||||||| |  ||||||||| |||||||||||||||||| ||||  ||| |||||||||||||||    
T  31896812 cattgtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaa 31896727  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 31912521 - 31912436
Alignment:
Q  17 cattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa 102  Q
    |||||||||||||||| ||||||||||| |  ||||||||| |||||||||||||||||| ||||  ||| |||||||||||||||    
T  31912521 cattgtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaa 31912436  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 31946169 - 31946084
Alignment:
Q  17 cattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa 102  Q
    |||||||||||||||| ||| ||||||| |  ||||||||| |||||||||||||||||| ||||  ||| |||||||||||||||    
T  31946169 cattgtaaatgacaaataatgaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatggctctgacctaa 31946084  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 232
Target Start/End: Original strand, 52131183 - 52131212
Alignment:
Q  203 taaatcgtgattcttccacttcttcctctc 232  Q
    ||||||||||||||||||||||||||||||    
T  52131183 taaatcgtgattcttccacttcttcctctc 52131212  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 11649405 - 11649352
Alignment:
Q  179 caccgtccactccccctttctctataaatcgtgattcttccacttcttcctctc 232  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11649405 caccgtccactccccctttctctgtaaatcgtgattcttccacttcttcctctc 11649352  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 11649523 - 11649475
Alignment:
Q  54 aatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa 102  Q
    |||||| |||||||||||||||||||||  |||||||||| ||||||||    
T  11649523 aatacaatgttgcatatccatctcattggaaaccatggctttgacctaa 11649475  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 22007561 - 22007601
Alignment:
Q  198 ctctataaatcgtgattcttccacttcttcctctctgcttc 238  Q
    |||| ||||||| |||||||||||||||||||||| |||||    
T  22007561 ctctgtaaatcgcgattcttccacttcttcctctcggcttc 22007601  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 27444300 - 27444387
Alignment:
Q  17 cattgtaaat-gacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcg-aaccatggctctgacctaa 102  Q
    |||||||||| |||||| | ||||||||| | ||||  ||||||||||||||||||||| |||||| | ||| |||||||||||||||    
T  27444300 cattgtaaattgacaaatagttaatgttatcggttttgaatacagtgttgcatatccatttcattgggaaacaatggctctgacctaa 27444387  T

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