View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9359_low_67 (Length: 226)

Name: NF9359_low_67
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9359_low_67
NF9359_low_67
[»] chr1 (1 HSPs)
chr1 (3-209)||(33987717-33987923)
[»] chr2 (12 HSPs)
chr2 (1-209)||(9026437-9026648)
chr2 (1-209)||(9020507-9020715)
chr2 (4-209)||(9031707-9031915)
chr2 (1-209)||(8988098-8988307)
chr2 (61-209)||(9023133-9023281)
chr2 (65-194)||(8991882-8992013)
chr2 (64-194)||(8973044-8973176)
chr2 (108-209)||(8975440-8975541)
chr2 (89-209)||(8996098-8996211)
chr2 (99-204)||(9030166-9030272)
chr2 (97-209)||(9016238-9016350)
chr2 (1-56)||(8996031-8996087)
[»] chr5 (1 HSPs)
chr5 (2-56)||(3643110-3643164)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 33987717 - 33987923
Alignment:
Q  3 cacaactgtggcactcaaaacaaatgaatgaacacaaagatgaaagatataatagcgttagccggttagcccatcaacaaaagcaagggataagataaga 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  33987717 cacaactgtggcactcaaaacaaatgaatgaacacaaagatgaaagatataatagccttacccggttagtccatcaacaaaagcaagggataagataaga 33987816  T
Q  103 atcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgtatctactctgattgatgata 202  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987817 atcagatcatgatattttgctgtaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgtatctactctgattgatgata 33987916  T
Q  203 atgtttt 209  Q
    |||||||    
T  33987917 atgtttt 33987923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 9026437 - 9026648
Alignment:
Q  1 cacacaactgtggcactcaaaa-caaatgaatgaacacaaagatgaaagatataatagcgttagccggttagcccatcaacaaaagcaagggataagata 99  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||| |    
T  9026437 cacacaacagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatagccttagcaagttagcccatcaacaaaagcaagggataagaaa 9026536  T
Q  100 agaatcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgta--tctactctgattga 197  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| ||||  | ||||||||||||    
T  9026537 agaataagatcatgatattttgctttaagacaagaatatcaatttaatttttggcaattcatcacgatggcctatgtgtgtgtatttttactctgattga 9026636  T
Q  198 tgataatgtttt 209  Q
    ||||||||||||    
T  9026637 tgataatgtttt 9026648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 9020507 - 9020715
Alignment:
Q  1 cacacaactgtggcactcaaaa-caaatgaatgaacacaaagatgaaagatataatagcgttagccggttagcccatcaacaaaagcaagggataagata 99  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  9020507 cacacaatagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatacccttagccggttagcccatcaacaaaagcaaggaataagata 9020606  T
Q  100 agaatcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgtatctactctgattgatg 199  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||| ||| | ||||||||||||||||| |||||||||    
T  9020607 agaatccgatcatgatattttgctttaagacgagaatatcaatttaatttttggcaattcaccatg-tggccaatgtgtatgtatctactttgattgatg 9020705  T
Q  200 ataatgtttt 209  Q
    ||||||||||    
T  9020706 ataatgtttt 9020715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 9031707 - 9031915
Alignment:
Q  4 acaactgtggcactcaaaa-caaatgaatgaacacaaagatgaaagatataatagcgttagccggttagcccatcaacaaaagcaagggataagataaga 102  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||| ||||    
T  9031707 acaacagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatagccttagcaagttagcccatcaacaaaagcaagggataagaaaaga 9031806  T
Q  103 atcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgta--tctactctgattgatga 200  Q
    || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| ||||  | |||||||||||||||    
T  9031807 ataagatcatgatattttgctttaagacaagaatatcaatttaatttttggcaattcatcacgatggcctatgtgtgtgtatttttactctgattgatga 9031906  T
Q  201 taatgtttt 209  Q
    |||||||||    
T  9031907 taatgtttt 9031915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 8988098 - 8988307
Alignment:
Q  1 cacacaactgtggcactcaaaacaaatgaatgaacacaaagatgaaagatataatagcgttagccggttagcccatcaacaaaagcaagggataagataa 100  Q
    |||||||| ||||| |||||||   | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8988098 cacacaacagtggctctcaaaa---acgaatgaacacaaagatgaaagatataatagccttagccggttagcccatcaacaaaagcaagggataagataa 8988194  T
Q  101 gaatcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatg----tatctactctgattg 196  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||    ||  |||| ||||||    
T  8988195 gaatcagatcatgatattttgccttaagacaagaatatcaattttatttttggcaattcatcatgatggcctatgtgtatgtacttacgtactatgattg 8988294  T
Q  197 atgataatgtttt 209  Q
    |||||||||||||    
T  8988295 atgataatgtttt 8988307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 61 - 209
Target Start/End: Original strand, 9023133 - 9023281
Alignment:
Q  61 tagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattca 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||    
T  9023133 tagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatactttgctttaagtcaagaatatcaatttaatttttggcaattca 9023232  T
Q  161 tcatgatggactatgtgtatgtatctactctgattgatgataatgtttt 209  Q
    || |||||| ||| |||||||||| |||| |||||||| ||||||||||    
T  9023233 tcgtgatggcctaggtgtatgtatttactatgattgatcataatgtttt 9023281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 8991882 - 8992013
Alignment:
Q  65 cggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgctttaagacaagaatattaatttaatttttg--gcaattcatc 162  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||     
T  8991882 cggttagcctatcaacaaaagcaagggataagataagaatcagatcatgatattttgctttaagacaagaatatcaatttaatttttgcttcaattcata 8991981  T
Q  163 atgatggactatgtgtatgtatctactctgat 194  Q
    ||||||| |||||||||||||| |||||||||    
T  8991982 atgatggcctatgtgtatgtatttactctgat 8992013  T

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Target: chr2; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 8973044 - 8973176
Alignment:
Q  64 ccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgctttaagacaagaatattaatttaatttttg--gcaattcat 161  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||   ||||||||    
T  8973044 ccggttagcctatcaacaaaagcaagggataagataagaatcagatcatgatattttgcttcaagacaagaatatcaatttaatttttgcttcaattcat 8973143  T
Q  162 catgatggactatgtgtatgtatctactctgat 194  Q
     ||| ||| ||||||||| |||| |||||||||    
T  8973144 aatggtggcctatgtgtaagtatttactctgat 8973176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 8975440 - 8975541
Alignment:
Q  108 atcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgtatctactctgattgatgataatgtt 207  Q
    |||||||||||||  |||||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  8975440 atcatgatatttttgtttaagactagaatatcaatttaattgttggcaattcatcatgatggcctatgtgtatgtatttactctgattgatgataatgtt 8975539  T
Q  208 tt 209  Q
    ||    
T  8975540 tt 8975541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 8996098 - 8996211
Alignment:
Q  89 gggataagataagaatcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgtatctac 188  Q
    ||||||||||| |||||||||||| |||||||||||       ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||    
T  8996098 gggataagatacgaatcagatcataatattttgctt-------agaatattaatttaatttttggcaattcaccatgatggcctatgtttatgtatctac 8996190  T
Q  189 tctgattgatgataatgtttt 209  Q
    | |||||||||||||||||||    
T  8996191 tatgattgatgataatgtttt 8996211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 9030166 - 9030272
Alignment:
Q  99 aagaatcagatcatgatattttgctttaagacaagaatattaatttaa-tttttggcaattcatcatgatggactatgtgtatgtatctactctgattga 197  Q
    |||||||||||| |||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||||| | ||| ||||||||||||    
T  9030166 aagaatcagatcgtgatatttggctttaagacaagaatatcaatttaattttttgacaattcatcatgatggcctatgtgtgtctatttactctgattga 9030265  T
Q  198 tgataat 204  Q
    |||||||    
T  9030266 tgataat 9030272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 9016238 - 9016350
Alignment:
Q  97 ataagaatcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgtatctactctgattg 196  Q
    |||||| |||||||||||||||||||| |||||||||||||| ||||||||||||  |||||||| ||  ||| | |||||||||||| |||||| ||||    
T  9016238 ataagagtcagatcatgatattttgctataagacaagaatatcaatttaatttttttcaattcataatcgtggcccatgtgtatgtatttactctaattg 9016337  T
Q  197 atgataatgtttt 209  Q
    |||||||||||||    
T  9016338 atgataatgtttt 9016350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8996031 - 8996087
Alignment:
Q  1 cacacaactgtggcactcaaaa-caaatgaatgaacacaaagatgaaagatataata 56  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  8996031 cacacaactgtggcactcaaaaacaaatgaaagaacacaaagatgaaagatataata 8996087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 3643110 - 3643164
Alignment:
Q  2 acacaactgtggcactcaaaacaaatgaatgaacacaaagatgaaagatataata 56  Q
    ||||||| |||| ||||||||  ||||||||||| |||||||||| |||||||||    
T  3643110 acacaacagtgggactcaaaaggaatgaatgaacccaaagatgaatgatataata 3643164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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