View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_74 (Length: 215)
Name: NF9359_low_74
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 15656637 - 15656812
Alignment:
| Q |
20 |
atggcagcatttttgagcttattctctttctctatgatgcgcttagctgccggccagtttccatttagagcatgcttgtgaatgggaacacaaaggttga |
119 |
Q |
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| T |
15656637 |
atggcagcatttttgagcttattctctttctctatgatgcgcttagctgccggccagtttccatttagagcatgcttgtgaatgggaacacaaaggttga |
15656736 |
T |
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| Q |
120 |
gaaaccttttctttggatcatcacctaaaacaaaggttcaatcgcagttaaagagagtaattaattatattgccttaaca |
199 |
Q |
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| T |
15656737 |
gaaaccttttccttggatcatcacctaaaacaaaggttcaatcgcagttaaagagagtaat----tatattgccttaaca |
15656812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 15495756 - 15495917
Alignment:
| Q |
20 |
atggcagcatttttgagcttattctctttctctatgatgcgcttagctgccggccagtttccatttagagcatgcttgtgaatgggaacacaaaggttga |
119 |
Q |
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| T |
15495756 |
atggcagcatttttaagctcattctgtttgtctaagatgcgtttggctgcaggccagtttccgtttagagcatgcttgtgaatgggaacacaaaacttga |
15495855 |
T |
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| Q |
120 |
gaaaccttttctttggatcatcacctaaaacaaaggttcaatcgcagttaaagagagtaatt |
181 |
Q |
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| T |
15495856 |
gaaaccttttgtttggatcatcgcctaaaacaaaggttcaattgcagttaaagagaataatt |
15495917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 15536094 - 15536256
Alignment:
| Q |
20 |
atggcagcatttttgagcttattctctttct----ctatgatgcgcttagctgccggccagtttccatttagagcatgcttgtgaatgggaacacaaagg |
115 |
Q |
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| T |
15536094 |
atggcagcatttttgagcttattctctatatatgtctaagatgtgcttggctgcaggccagtttccgtttagagcatgcttgtgaatgggaacacaatgc |
15536193 |
T |
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| Q |
116 |
ttgagaaaccttttctttggatcatcacctaaaacaaaggttcaatcgcagttaaagagagta |
178 |
Q |
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| T |
15536194 |
ttgagaaaccttttcctttgatcatcacctaaaacaaaggttcaattgcagttaaagagagta |
15536256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 15647318 - 15647459
Alignment:
| Q |
20 |
atggcagcatttttgagcttattctctttctctatgatgcgcttagctgccggccagtttccatttagagcatgcttgtgaatgggaacacaaaggttga |
119 |
Q |
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| T |
15647318 |
atggcagcatttttgagcttcttctctttgtctaagatgcggttagctgctagccaatttccgtttagagcatgcttgtgaatgggaacgcaaaggttga |
15647417 |
T |
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| Q |
120 |
gaaaccttttctttggatcatcacctaaaacaaaggttcaat |
161 |
Q |
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| T |
15647418 |
gaaactttttcttttgatcatcacctaaaacaaaggttcaat |
15647459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 15519797 - 15519928
Alignment:
| Q |
20 |
atggcagcatttttgagcttattctctttctctatgatgcgcttagctgccggccagtttccatttagagcatgcttgtgaatgggaacacaaaggttga |
119 |
Q |
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|||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | |||| |
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| T |
15519797 |
atggcagcattttttagcttattctctttgtctataatgcgcttagctgctggccagtttccattcagagcatgcttgtgaatgggaacacaatgcttga |
15519896 |
T |
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| Q |
120 |
gaaaccttttctttggatcatcacctaaaaca |
151 |
Q |
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| T |
15519897 |
gaaaccctttatttgcatcatcacctaaaaca |
15519928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 15626992 - 15627123
Alignment:
| Q |
20 |
atggcagcatttttgagcttattctctttctctatgatgcgcttagctgccggccagtttccatttagagcatgcttgtgaatgggaacacaaaggttga |
119 |
Q |
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|||||||||||||| ||||||| |||| |||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
15626992 |
atggcagcatttttcagcttatcgtcttcgtctaagatgcgcttggctgctggccagtttccatttagagcatgtttgtgaatgggaacacaaagcttga |
15627091 |
T |
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| Q |
120 |
gaaaccttttctttggatcatcacctaaaaca |
151 |
Q |
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| T |
15627092 |
gaaaccttttccttggatcattacctaaaaca |
15627123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 15608941 - 15609106
Alignment:
| Q |
20 |
atggcagcatttttgagcttattctctttctctatgatgcgcttagctgccggccagtttccatttagagcatgcttgtgaatgggaacacaaaggttga |
119 |
Q |
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|||||||||||||||||| | ||||| || |||| |||| | || ||||| |||||||||||| |||||||||||||| ||| |||||||||||||||| |
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| T |
15608941 |
atggcagcatttttgagcctgttctcgttgtctaagatgtgtttggctgctcgccagtttccatgtagagcatgcttgtaaattggaacacaaaggttga |
15609040 |
T |
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| Q |
120 |
gaaaccttttctttggatcatcacctaaaacaaaggttcaatcgcagttaaagagagtaat-taattatattgcc |
193 |
Q |
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|||| || ||||| ||||||||||||||||||| | |||||||||||||||| ||||| ||||||| |
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| T |
15609041 |
gaaagct---------atcatttcctaaaacaaaggttcaattgaagttaaagagagtaatataattctattgcc |
15609106 |
T |
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