View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9359_low_78 (Length: 209)
Name: NF9359_low_78
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 12608161 - 12607986
Alignment:
| Q |
17 |
aggaaggtaagctagaatgcaggcaaggaagggtgcaccaacaactcaaactcagatacttgaattgtatatcgttgaatcgtcaaaactcaaaagcctc |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
12608161 |
aggaaggtaagctagaatgcagccaaggaagggtgcaccaacaactcaaactcagatactcgaattgtatatccttgaatcgtcaaaactcaaaagcctc |
12608062 |
T |
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| Q |
117 |
taaatgtttgcagtgaaaacttctctgtagactaaaatacccaataaagctgaacagcctaataaaaccatactct |
192 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12608061 |
taaatgtttgcagtgaaaacttctctgtagagtaaaatactcaataaagctgaacagcctaataaaaccatactct |
12607986 |
T |
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