View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9359_low_9 (Length: 601)
Name: NF9359_low_9
Description: NF9359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9359_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 13 - 583
Target Start/End: Original strand, 11470666 - 11471231
Alignment:
| Q |
13 |
aatagttgattgacgaacgcatagtaattctcgagtatgaactctaatgagaacaagaggacaggttgaagactcaagcagacaaggtggcgactttatc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11470666 |
aatagttgattgacgaacgcatagtaattctcgagtatgaactctaatgagaacaagaggacaggttgaagactcaagcagacaaggtggcgactttatc |
11470765 |
T |
|
| Q |
113 |
gatctttgcaccatagagttacatcacagttagttaaccgaagaatctcttacaggcaatagcatttcggccaaactgataaccgttgaaggaatacact |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11470766 |
gatctttgcaccatagagttacatcacagttagttaaccgaagaatctcttacaggcaatagcatttcggccaaactgataaccgttgaaggaatacact |
11470865 |
T |
|
| Q |
213 |
ttgtgctctttttgtttcctgtaatttcgtgcttcatatccaacttttccccatggcttggcctcttggagggagatatcatgtacttttatctttcgac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11470866 |
ttgtgctctttttgtttcctgtaatttcgtgcttcatatccaacttttccccatggcttggcctcttggagggagatatcatgtacttttgtctttcgac |
11470965 |
T |
|
| Q |
313 |
aaaacaattcatttgaatgtaaccttacctatctttgtaatattccaacattaatattatgtaatcttgtcgaaatttatcaacaagaatcttcctttac |
412 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11470966 |
aaaacaattcatttgaatgtaaccttatctatctttgtaatattcca-----aacattatgtaatcttgtcgaaatttatcaacaagaatcttcctttac |
11471060 |
T |
|
| Q |
413 |
annnnnnnngttgtttcatcgttatcctttctcaatatatttgtataactctaaacgttttgatgaaacttagttttgaaccatacattacatttgccag |
512 |
Q |
| |
|
| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
11471061 |
attttttttgctgtttcatcgttatcctttctgaatatatttgtataactctaaacgttttgatgaaacttagttttgaaccatacattgcatttgctag |
11471160 |
T |
|
| Q |
513 |
tttgtaacaattgaatcatgcaacttttcattttcatgtttaactttgaaatcttaagttttcaacttgat |
583 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11471161 |
tttgtaacaattgtatcatgcaacttctcattttcatgtttaactttgaaatcttaaattttcaacttgat |
11471231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University