View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9360_high_11 (Length: 241)

Name: NF9360_high_11
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9360_high_11
NF9360_high_11
[»] chr4 (33 HSPs)
chr4 (20-173)||(48852159-48852314)
chr4 (124-222)||(48735713-48735811)
chr4 (121-222)||(48870121-48870222)
chr4 (121-222)||(48885807-48885908)
chr4 (123-223)||(48170986-48171086)
chr4 (123-230)||(7770985-7771092)
chr4 (124-223)||(48862823-48862922)
chr4 (116-230)||(45372447-45372561)
chr4 (123-223)||(33134223-33134323)
chr4 (123-222)||(7789670-7789769)
chr4 (124-223)||(48148082-48148181)
chr4 (123-222)||(48875427-48875526)
chr4 (123-224)||(7238116-7238217)
chr4 (123-223)||(33133618-33133718)
chr4 (123-223)||(45366618-45366718)
chr4 (159-222)||(48156825-48156888)
chr4 (156-222)||(48891023-48891089)
chr4 (123-228)||(7907906-7908011)
chr4 (123-224)||(48902531-48902632)
chr4 (167-224)||(49041534-49041591)
chr4 (121-223)||(48898301-48898403)
chr4 (120-224)||(7813058-7813162)
chr4 (167-230)||(7904657-7904720)
chr4 (123-224)||(7774225-7774326)
chr4 (120-224)||(7800215-7800319)
chr4 (156-224)||(7822583-7822651)
chr4 (123-223)||(49044626-49044726)
chr4 (121-216)||(45385191-45385286)
chr4 (166-224)||(7877344-7877402)
chr4 (134-222)||(50668635-50668723)
chr4 (150-230)||(7765229-7765309)
chr4 (160-222)||(47207552-47207614)
chr4 (166-223)||(49048996-49049053)
[»] chr8 (6 HSPs)
chr8 (129-229)||(15348449-15348549)
chr8 (152-230)||(12199917-12199995)
chr8 (152-230)||(12444345-12444423)
chr8 (152-224)||(12194911-12194983)
chr8 (152-224)||(12439339-12439411)
chr8 (115-230)||(4032306-4032421)
[»] chr1 (5 HSPs)
chr1 (166-222)||(24322086-24322142)
chr1 (156-219)||(24415451-24415514)
chr1 (161-224)||(24309796-24309859)
chr1 (158-224)||(24340030-24340096)
chr1 (152-222)||(24366765-24366835)
[»] chr5 (6 HSPs)
chr5 (160-223)||(42562728-42562791)
chr5 (160-223)||(29712866-29712929)
chr5 (161-222)||(178638-178699)
chr5 (158-219)||(29695768-29695829)
chr5 (123-222)||(1812006-1812105)
chr5 (160-216)||(29687669-29687725)
[»] chr3 (4 HSPs)
chr3 (118-224)||(11015921-11016027)
chr3 (126-224)||(11024933-11025031)
chr3 (118-230)||(11006352-11006464)
chr3 (123-230)||(47452297-47452404)
[»] scaffold0508 (1 HSPs)
scaffold0508 (158-224)||(11878-11944)
[»] chr7 (1 HSPs)
chr7 (123-222)||(48883363-48883465)
[»] chr6 (2 HSPs)
chr6 (123-223)||(21015357-21015457)
chr6 (123-223)||(21980041-21980141)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 48852159 - 48852314
Alignment:
Q  20 ataagctctctattaata--cctcatacatcgcatcttaggactcacgcttcagtatttgtgatcatcctacaaactaaaatacacatggacaagatgat 117  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48852159 ataagctctctattaatatacctcatacatcgcatcttaggactcacgcttcagtatttgtgatcatcctacaaactaaaatacacatggagaagatgat 48852258  T
Q  118 cctgcatctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48852259 cctgcatctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagt 48852314  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 48735811 - 48735713
Alignment:
Q  124 tctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48735811 tctgcctcatgagttgatagttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctc 48735713  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 48870121 - 48870222
Alignment:
Q  121 gcatctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatc 220  Q
    |||||||| |||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  48870121 gcatctgcatcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatc 48870220  T
Q  221 tc 222  Q
    ||    
T  48870221 tc 48870222  T

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Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 48885807 - 48885908
Alignment:
Q  121 gcatctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatc 220  Q
    |||||||| |||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  48885807 gcatctgcatcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatc 48885906  T
Q  221 tc 222  Q
    ||    
T  48885907 tc 48885908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 48171086 - 48170986
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    ||||| ||| ||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||    
T  48171086 atctggctcttgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctc 48170987  T
Q  223 t 223  Q
    |    
T  48170986 t 48170986  T

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Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 7770985 - 7771092
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||||||||||||| | ||| | || |||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  7770985 atctgcctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctc 7771084  T
Q  223 tgctcctc 230  Q
    || |||||    
T  7771085 tgatcctc 7771092  T

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Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 48862823 - 48862922
Alignment:
Q  124 tctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctct 223  Q
    ||||||||||||||||||  | |  || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48862823 tctgcctcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctct 48862922  T

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Target: chr4; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 45372561 - 45372447
Alignment:
Q  116 atcctgcatctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctc 215  Q
    |||| |||| ||||||||||||||||  |||| ||||| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||     
T  45372561 atccagcatatgcctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttcta 45372462  T
Q  216 ttatctctgctcctc 230  Q
    ||||||||| |||||    
T  45372461 ttatctctgatcctc 45372447  T

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Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 33134323 - 33134223
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||||||||||||||||||  | |  |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  33134323 atctgcctcatgaattgatcatccttattctgttgagattaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctc 33134224  T
Q  223 t 223  Q
    |    
T  33134223 t 33134223  T

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Target: chr4; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 7789670 - 7789769
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||||||||||||| ||||| | || |||||| ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||    
T  7789670 atctgcctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctc 7789769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 48148181 - 48148082
Alignment:
Q  124 tctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctct 223  Q
    ||||||| |||||||||||||||| || ||    |||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  48148181 tctgcctgatgaattgatagttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctct 48148082  T

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Target: chr4; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 48875427 - 48875526
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||| ||||| || ||||| ||||| ||||||||||||||| | || |||||||| |||||||||||||||||||| ||||||||||||||||| |||||    
T  48875427 atctacctcaggacttgatcgttcaaattctgctgaggttatcagtcaagtctctaattcgtttcaaatgcgtttgcaagtcttggttttctctcatctc 48875526  T

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Target: chr4; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 7238217 - 7238116
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||||||||||||| | ||  | || |||||| ||||||| || ||||||||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  7238217 atctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctc 7238118  T
Q  223 tg 224  Q
    ||    
T  7238117 tg 7238116  T

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Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 33133618 - 33133718
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||||||||||||||||||  | |  |||||||| ||||||||  |||||||||||||||||||||||| | ||||||||  ||||||||||||||||||    
T  33133618 atctgcctcatgaattgatcatccttattctgctaaggttaccaatgaagtctcttattcgtttcaaattcatttgtaagctttggttttctcttatctc 33133717  T
Q  223 t 223  Q
    |    
T  33133718 t 33133718  T

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Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 45366718 - 45366618
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||| ||||||||||||||  | || || || || |||||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctc 45366619  T
Q  223 t 223  Q
    |    
T  45366618 t 45366618  T

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Target: chr4; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 48156888 - 48156825
Alignment:
Q  159 ggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  48156888 ggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctc 48156825  T

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Target: chr4; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 48891023 - 48891089
Alignment:
Q  156 tgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  48891023 tgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctc 48891089  T

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Target: chr4; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 7907906 - 7908011
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||| ||||||||||||||  | ||||| || |||||||| ||||||||||||||||  |||||||| |  ||| ||||||| |||||||||||||||||    
T  7907906 atcttcctcatgaattgattttccagatcctactgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctc 7908005  T
Q  223 tgctcc 228  Q
    ||||||    
T  7908006 tgctcc 7908011  T

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Target: chr4; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 48902531 - 48902632
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||| ||||||||||||||  | || ||| ||| | |||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||    
T  48902531 atctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttatatc 48902630  T
Q  223 tg 224  Q
    ||    
T  48902631 tg 48902632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 49041591 - 49041534
Alignment:
Q  167 gtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 224  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  49041591 gtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctg 49041534  T

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Target: chr4; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 48898301 - 48898403
Alignment:
Q  121 gcatctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatc 220  Q
    |||||| |||||||||||| |  |||| |||||||||||  |||| |||||||||||||  |||||||| || ||||||||||||||||| || ||||||    
T  48898301 gcatcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatc 48898400  T
Q  221 tct 223  Q
    |||    
T  48898401 tct 48898403  T

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Target: chr4; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 7813058 - 7813162
Alignment:
Q  120 tgcatctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttat 219  Q
    |||||||||||||||| |||||| | |  ||  || ||||||| |||||||||| |||||| |||||||| || |||||||| || ||||||||||||||    
T  7813058 tgcatctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttat 7813157  T
Q  220 ctctg 224  Q
    |||||    
T  7813158 ctctg 7813162  T

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Target: chr4; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 7904657 - 7904720
Alignment:
Q  167 gtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctgctcctc 230  Q
    |||||||||||||| ||||||||||| ||||||||||  ||||||||||||||||||| |||||    
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatcctc 7904720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 7774326 - 7774225
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||| ||||||||||||||  |||| ||  || || || | ||||||||||||||||||| ||||||||| |||||||||   |||||||||||||||||    
T  7774326 atcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatctc 7774227  T
Q  223 tg 224  Q
    ||    
T  7774226 tg 7774225  T

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Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 7800215 - 7800319
Alignment:
Q  120 tgcatctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttat 219  Q
    |||||||||||||||| |||||| | |  ||  || ||||||| |||||||||| |||||| |||||||| || |||||||| || |||||||||||| |    
T  7800215 tgcatctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgt 7800314  T
Q  220 ctctg 224  Q
    |||||    
T  7800315 ctctg 7800319  T

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Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 7822583 - 7822651
Alignment:
Q  156 tgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 224  Q
    ||||||| |||||||||| |||||| |||||||| || |||||||| || |||||||||||||||||||    
T  7822583 tgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctg 7822651  T

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Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 49044726 - 49044626
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    ||||||||||||| |||||  | |  |||||||||||||| || |||| ||||||| | |||||||| || ||||||||||  |||||||||||||||||    
T  49044726 atctgcctcatgacttgatcatccttattctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctc 49044627  T
Q  223 t 223  Q
    |    
T  49044626 t 49044626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 216
Target Start/End: Complemental strand, 45385286 - 45385191
Alignment:
Q  121 gcatctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctct 216  Q
    |||| ||||| ||||||||||  | || || || || |||||||| || |||||||| || |||||||||| ||||||||||||||||||||||||    
T  45385286 gcatatgcctaatgaattgatgatccaaatcctactaaggttaccagttaagtctctcatacgtttcaaatccgtttgtaagtcttggttttctct 45385191  T

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Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 7877344 - 7877402
Alignment:
Q  166 ggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 224  Q
    ||||||||||||||| |||||||||||| ||||||||   |||||||||||||||||||    
T  7877344 ggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctg 7877402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 50668635 - 50668723
Alignment:
Q  134 gaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    ||||||||  |||| ||| || ||||||| || ||||| | |||||| |||||||| ||||||||||| |||||||||||||| |||||    
T  50668635 gaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctc 50668723  T

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Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 7765229 - 7765309
Alignment:
Q  150 ttctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctgctcctc 230  Q
    ||||| ||||||||||||||||||||||  |   |||||| ||| |||||||||  ||||||||| ||||||||| |||||    
T  7765229 ttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctc 7765309  T

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Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 47207552 - 47207614
Alignment:
Q  160 gttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    ||||||||||||||||||||| ||||| ||  | ||||| |||||||| |||||||| |||||    
T  47207552 gttaccggtgaagtctcttatacgttttaagagtgtttggaagtcttgattttctctcatctc 47207614  T

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Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 49049053 - 49048996
Alignment:
Q  166 ggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctct 223  Q
    ||||| ||||||| | |||||||| || ||||||||||  ||||||||||||||||||    
T  49049053 ggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 15348449 - 15348549
Alignment:
Q  129 ctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctgctcc 228  Q
    |||||||||| |||||||| |||||   |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  15348449 ctcatgaattaatagttcaaattctagagaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcc 15348548  T
Q  229 t 229  Q
    |    
T  15348549 t 15348549  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 12199917 - 12199995
Alignment:
Q  152 ctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctgctcctc 230  Q
    ||||||||||| ||||||||||||||| |  |||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  12199917 ctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctc 12199995  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 12444345 - 12444423
Alignment:
Q  152 ctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctgctcctc 230  Q
    ||||||||||| ||||||||||||||| |  |||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  12444345 ctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctc 12444423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 12194911 - 12194983
Alignment:
Q  152 ctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 224  Q
    ||||||||||| ||||||||||||||| |  ||||||||||| |||||||||| ||||| |||||||||||||    
T  12194911 ctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12194983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 12439339 - 12439411
Alignment:
Q  152 ctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 224  Q
    ||||||||||| ||||||||||||||| |  ||||||||||| |||||||||| ||||| |||||||||||||    
T  12439339 ctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12439411  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 4032421 - 4032306
Alignment:
Q  115 gatcctgcatctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttct 214  Q
    |||| ||||| ||||||||||||||||  | || ||  | |||||  ||||  ||||||||||||| |||||||| || |||||||| ||||||||  ||    
T  4032421 gatcttgcatatgcctcatgaattgatcatccaaatcttactgagactaccaatgaagtctcttatacgtttcaagtgtgtttgtaaatcttggttaact 4032322  T
Q  215 cttatctctgctcctc 230  Q
    ||||| |||| |||||    
T  4032321 cttatatctgatcctc 4032306  T

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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 24322086 - 24322142
Alignment:
Q  166 ggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24322086 ggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 24415451 - 24415514
Alignment:
Q  156 tgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttat 219  Q
    |||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24415451 tgagattaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 24309796 - 24309859
Alignment:
Q  161 ttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 224  Q
    |||||||| |||||||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  24309796 ttaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctg 24309859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 24340030 - 24340096
Alignment:
Q  158 aggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 224  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||| ||||||||||    
T  24340030 aggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctg 24340096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 24366765 - 24366835
Alignment:
Q  152 ctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||||||||||||| ||  |  |||| |||||||||||||| ||||| ||||| |||||||||||||||||    
T  24366765 ctgctgaggttaccagttgaaactctgattcgtttcaaatgtgtttgcaagtcatggttttctcttatctc 24366835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 42562791 - 42562728
Alignment:
Q  160 gttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctct 223  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42562791 gttaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctctaatctct 42562728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 29712929 - 29712866
Alignment:
Q  160 gttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctct 223  Q
    |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  29712929 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 178638 - 178699
Alignment:
Q  161 ttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||    
T  178638 ttaccagttaagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctc 178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 29695768 - 29695829
Alignment:
Q  158 aggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttat 219  Q
    |||||||| || ||||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  29695768 aggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggttatctcttat 29695829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 1812006 - 1812105
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||| ||||| ||| |||| ||||| ||| || |||||||||| ||||||| ||| || |||| |||||| ||||||||||  |||||||||||||||||    
T  1812006 atcttcctcaggaactgatcgttcaaattttgttgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 29687669 - 29687725
Alignment:
Q  160 gttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctct 216  Q
    |||||| |||||||||||||| || ||||| || |||||||||||||||||||||||    
T  29687669 gttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctct 29687725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 11016027 - 11015921
Alignment:
Q  118 cctgcatctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctctt 217  Q
    |||| |||||||||||||||||||| | || ||  || |||||||||||||||||||||| || ||||||||||||||||||||||| | |||  |||||    
T  11016027 cctgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctctt 11015928  T
Q  218 atctctg 224  Q
    |||||||    
T  11015927 atctctg 11015921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 11025031 - 11024933
Alignment:
Q  126 tgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 224  Q
    ||||||||||||||||  | || ||  || |||||||||||||||||||||| || ||||||||||||||||||||||| |||||  ||||||||||||    
T  11025031 tgcctcatgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctg 11024933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 11006464 - 11006352
Alignment:
Q  118 cctgcatctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctctt 217  Q
    |||| |||||||||||||||||||  | || ||  || ||||||| ||||||||||| ||||| |||||||| || ||||||||||| |||||  |||||    
T  11006464 cctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactctt 11006365  T
Q  218 atctctgctcctc 230  Q
    ||||||| |||||    
T  11006364 atctctgatcctc 11006352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 47452404 - 47452297
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||| |||| |||||||||| | |||||  || ||||||| ||||||||||||||| | || ||||| ||| ||| |||||| |||||||||||||||||    
T  47452404 atctacctcttgaattgataatccagatcttggtgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc 47452305  T
Q  223 tgctcctc 230  Q
    || |||||    
T  47452304 tgatcctc 47452297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 11878 - 11944
Alignment:
Q  158 aggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 224  Q
    ||||||||| | ||||||||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  11878 aggttaccgattaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctg 11944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 48883363 - 48883465
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttc---aaatgcgtttgtaagtcttggttttctcttat 219  Q
    ||||||||| |||||| ||  |||| ||| || |||||||||  |||||||||||| | ||||||   ||||| ||||||||| |||||||||||||| |    
T  48883363 atctgcctcttgaattaatcattcaaattttggtgaggttacatgtgaagtctcttttacgtttcaaaaaatgtgtttgtaagccttggttttctcttct 48883462  T
Q  220 ctc 222  Q
    |||    
T  48883463 ctc 48883465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 21015357 - 21015457
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||||||||| ||||||||  | |  ||| || ||||||||||||| | ||||||| | |||||||| || ||||||||||  | |||||||||||||||    
T  21015357 atctgcctcaagaattgatcatcctaattttgttgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctc 21015456  T
Q  223 t 223  Q
    |    
T  21015457 t 21015457  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 21980141 - 21980041
Alignment:
Q  123 atctgcctcatgaattgatagttcagattctgctgaggttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 222  Q
    |||||||||||||| ||||| |  | || ||||| |||| ||| || ||||||||    |||||||| || ||||||||||||||||||||||| |||||    
T  21980141 atctgcctcatgaactgataatcgaaatcctgctaaggtaaccagtaaagtctctctcacgtttcaagtgtgtttgtaagtcttggttttctctcatctc 21980042  T
Q  223 t 223  Q
    |    
T  21980041 t 21980041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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