View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9360_high_3 (Length: 361)
Name: NF9360_high_3
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 23 - 351
Target Start/End: Original strand, 41412570 - 41412905
Alignment:
| Q |
23 |
cagataccagagcccctgtcactgcacctccgaatgtggcattcttctgcagtacatcaaaagaccaagggaacaacggtaagaatctcaactgaaaaat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41412570 |
cagataccagagcccctgtcactgcacctccgaatgtggcattcttctgcagtacatcaaaagaccaagggaacaacggtaagaatctcaactgaaaaat |
41412669 |
T |
|
| Q |
123 |
ctaacttaaattgaacaataaaaggcatggc--actgtctaaaactaa-----cacatttgacacccaacttttacagattcatttttaaacatgatgct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
41412670 |
ctaacttaaattgaacaataaaaggcatggctcactgtctaaaactaagttaacacatttgacacctaacttttacagattcattttcaaacatgatgct |
41412769 |
T |
|
| Q |
216 |
tgttaaaaacagcttgaaatttaagaggttagatgccattatatggaaggaaaatccagaaataaagtgctctctagcatagaatgtacaataacaccaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41412770 |
tgttaaaaacagcttgaaatttaagagattagatgccattatatggaagaaaaatccagaaataaagtgctctctagcatagaatgtacaataacaccaa |
41412869 |
T |
|
| Q |
316 |
gtctattttaagtgtaagagaattacccagtctctg |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
41412870 |
gtctattttaagtgtaagagaattacccagtctctg |
41412905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 41418140 - 41418389
Alignment:
| Q |
23 |
cagataccagagcccctgtcactgcacctccgaatgtggcattcttctgcagtacatcaaaagaccaagggaaca----------acggtaagaatctca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| ||||||||| ||||||| ||||| |
|
|
| T |
41418140 |
cagataccagagcccctgtcactgcacctccgatcattgcattcttctgcagtatatcaaaagataaagggaacagaatggtccttgggtaagactctca |
41418239 |
T |
|
| Q |
113 |
actgaaaaatctaacttaaattgaacaataaaaggcatg--gcactgtctaaaacta-------acacatttgacacccaacttttacagattcattttt |
203 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||| |||| |||| | ||||||| | |||||||||||||||| |||||||| |||||||| |
|
|
| T |
41418240 |
actgaaaaatcaaatttaaattgaactataaaagacatgttgcaccgcctaaaacaaagttaacacacatttgacacccagcttttacaaattcatttcc |
41418339 |
T |
|
| Q |
204 |
aaacatgatgcttgttaaaaacagcttgaaatttaagaggttagatgcca |
253 |
Q |
| |
|
||| |||||||||||||| |||||||||||| ||| ||| ||||| |||| |
|
|
| T |
41418340 |
aaatatgatgcttgttaataacagcttgaaacttatgagattagacgcca |
41418389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University