View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9360_high_4 (Length: 351)

Name: NF9360_high_4
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9360_high_4
NF9360_high_4
[»] chr1 (9 HSPs)
chr1 (1-334)||(48667234-48667567)
chr1 (1-230)||(48661639-48661868)
chr1 (1-227)||(48639987-48640213)
chr1 (1-205)||(48585414-48585618)
chr1 (13-228)||(48628965-48629182)
chr1 (78-203)||(48618046-48618171)
chr1 (154-203)||(48653360-48653409)
chr1 (143-201)||(11547460-11547518)
chr1 (274-333)||(48661906-48661965)
[»] chr3 (2 HSPs)
chr3 (78-228)||(19665377-19665527)
chr3 (265-315)||(19665278-19665328)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 48667234 - 48667567
Alignment:
Q  1 aggttcttcatttgaagggaaaggtagcaatttgtggacataatcatagcaaatggtgaaaacagcacaagaattagtccataacaaagcagaaggaata 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48667234 aggttcttcatttgaagggaaaggtaacaatttgtggacataatcatagcaaatggtgaaaacagcactagaattagtccataacaaagcagaaggaata 48667333  T
Q  101 ttgtgttcaaaagctatatcactaacccatggnnnnnnngggttgtttataatacatgaaattggtttgttcgaatcagcatgattctttatcatttgag 200  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48667334 ttgtgttcaaaagctatatcactaacccatggaaaaaaagggttgtttataatacatgaaattggtttgttcgaatcagcatgattctttatcatttgag 48667433  T
Q  201 aaataaattgtctcccaacaagctcaagttttttgtggtggtcaagagggtgagcataatcgggtaaaccgtcatcaaagaactggaacattagagaacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48667434 aaataaattgtctcccaacaagctcaagttttttgtggtggtcaagagggtgagcataatcgggtaaaccgtcatcaaagaactggaacattagagaacc 48667533  T
Q  301 atcaccaattggagtagccaatttgttggtgatt 334  Q
    |||||||||||||||||| |||||||||||||||    
T  48667534 atcaccaattggagtagctaatttgttggtgatt 48667567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 48661639 - 48661868
Alignment:
Q  1 aggttcttcatttgaagggaaaggtagcaatttgtggacataatcatagcaaatggtgaaaacagcacaagaattagtccataacaaagcagaaggaata 100  Q
    ||||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||  ||||| ||||  |||||||||||||| |||||||||||||||    
T  48661639 aggttcttcatttgatgggaaaggtaccaatttgtggacatagtcatagcaaacggcaaaaactgcactggaattagtccataataaagcagaaggaata 48661738  T
Q  101 ttgtgttcaaaagctatatcactaacccatggnnnnnnngggttgtttataatacatgaaattggtttgttcgaatcagcatgattctttatcatttgag 200  Q
    |||||||||||||||||||||| |||||||||       || |||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||||    
T  48661739 ttgtgttcaaaagctatatcacaaacccatggaagaaatggattgtttatgacacatgaaattggtttgtttgaatcagcatgattcttgatcatttgag 48661838  T
Q  201 aaataaattgtctcccaacaagctcaagtt 230  Q
    ||| ||| |||||||||| | |||||||||    
T  48661839 aaacaaactgtctcccaatacgctcaagtt 48661868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 48639987 - 48640213
Alignment:
Q  1 aggttcttcatttgaagggaaaggtagcaatttgtggacataatcatagcaaatggtgaaaacagcacaagaattagtccataacaaagcagaaggaata 100  Q
    |||||||||||||| |||||||| |   |||||||||||||| | |||| || ||||||||||||||   |||||||||||| ||||| |||||||||||    
T  48639987 aggttcttcatttgtagggaaagatgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgacaaaacagaaggaata 48640086  T
Q  101 ttgtgttcaaaagctatatcactaacccatggnnnnnnngggttgtttataatacatgaaattggtttgttcgaatcagcatgattctttatcatttgag 200  Q
    |||||||||  ||| |  |||| |||||||||         ||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||||| |    
T  48640087 ttgtgttcattagcaacgtcacaaacccatggaaaaaaatagttgtttatgatacatgaaaatggtttgtttgaatcggcatgattctttatcatttgtg 48640186  T
Q  201 aaataaattgtctcccaacaagctcaa 227  Q
    ||||||| ||||| ||| ||| |||||    
T  48640187 aaataaagtgtctgccagcaacctcaa 48640213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 48585414 - 48585618
Alignment:
Q  1 aggttcttcatttgaagggaaaggtagcaatttgtggacataatcatagcaaatggtgaaaacagcacaagaattagtccataacaaagcagaaggaata 100  Q
    |||||||||||||| ||||||||||   |||||||||||||| | |||| || ||||||||||||||   |||||||||||| | ||| |||||||||||    
T  48585414 aggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaata 48585513  T
Q  101 ttgtgttcaaaagctatatcactaacccatggnnnnnnngggttgtttataatacatgaaattggtttgttcgaatcagcatgattctttatcatttgag 200  Q
    |||||||||  ||| | ||||| |||||||||          |||||||| |||||||||| |||||||||  |||||||||||||||| ||||||||||    
T  48585514 ttgtgttcattagcaacatcacaaacccatggaaaaaaataattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgatcatttgag 48585613  T
Q  201 aaata 205  Q
    |||||    
T  48585614 aaata 48585618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 48628965 - 48629182
Alignment:
Q  13 tgaagggaaaggtagcaatttgtggacataatcatagcaaatggtgaaaacagcacaagaattagtccataacaaagcagaaggaatattgtgttcaaaa 112  Q
    |||||| |||||||  | |||||||||||| | |||| || ||| ||||||||||| ||||||| ||||| | |||||||||||||| |  |||||||||    
T  48628965 tgaaggaaaaggtacaagtttgtggacatagttatagtaagtggcgaaaacagcactagaattattccatgataaagcagaaggaatgtcatgttcaaaa 48629064  T
Q  113 gctatatcactaacccatggnnnnnnngggttgtttataatacatgaaattggtttgttcgaatcagcatgattctttatcattt--gagaaataaattg 210  Q
    |||| ||| | |||||||||       || |||| ||| |||||||||||||||||  | ||||||||||||||||| |||||||  || ||| ||| ||    
T  48629065 gctacatcgcaaacccatggaagaaaaggattgtatatgatacatgaaattggtttacttgaatcagcatgattcttgatcattttagaaaaaaaaactg 48629164  T
Q  211 tctcccaacaagctcaag 228  Q
     |||||||||||||||||    
T  48629165 cctcccaacaagctcaag 48629182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 48618171 - 48618046
Alignment:
Q  78 tccataacaaagcagaaggaatattgtgttcaaaagctatatcactaacccatggnnnnnnngggttgtttataatacatgaaattggtttgttcgaatc 177  Q
    |||||||||||||||||||||||   ||||||  ||||| ||||| |||||||||       || |||||||| |||||||||| ||||||||| |||||    
T  48618171 tccataacaaagcagaaggaataccatgttcatcagctacatcacaaacccatggaacaaaaggattgtttatgatacatgaaaatggtttgtttgaatc 48618072  T
Q  178 agcatgattctttatcatttgagaaa 203  Q
    |||||||||||| |||||||||||||    
T  48618071 agcatgattcttgatcatttgagaaa 48618046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 48653360 - 48653409
Alignment:
Q  154 acatgaaattggtttgttcgaatcagcatgattctttatcatttgagaaa 203  Q
    |||||||||||||||||| || |||||||||||||| |||||||||||||    
T  48653360 acatgaaattggtttgtttgactcagcatgattcttgatcatttgagaaa 48653409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 11547460 - 11547518
Alignment:
Q  143 ttgtttataatacatgaaattggtttgttcgaatcagcatgattctttatcatttgaga 201  Q
    |||||||| ||||| |||||||||||||| || ||| |||||||||| |||||||||||    
T  11547460 ttgtttatgatacaagaaattggtttgtttgactcaacatgattcttgatcatttgaga 11547518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 48661906 - 48661965
Alignment:
Q  274 atcaaagaactggaacattagagaaccatcaccaattggagtagccaatttgttggtgat 333  Q
    ||||||||||| ||| || |||||||||||||| || ||||| || ||||||||||||||    
T  48661906 atcaaagaactcgaaaatgagagaaccatcacctatcggagttgctaatttgttggtgat 48661965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 228
Target Start/End: Complemental strand, 19665527 - 19665377
Alignment:
Q  78 tccataacaaagcagaaggaatattgtgttcaaaagctatatcactaacccatggnnnnnnngggttgtttataatacatgaaattggtttgttcgaatc 177  Q
    ||||||||||||||||||||||||  |||| | |||||| ||||| |||||||||       || |||||||| || || ||||| |||||||| || ||    
T  19665527 tccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacccatggaagaaaaggattgtttatgatgcaagaaataggtttgtttgactc 19665428  T
Q  178 agcatgattctttatcatttgagaaataaattgtctcccaacaagctcaag 228  Q
    |  ||||||||| ||||||||||||| ||| | | ||||||||||||||||    
T  19665427 attatgattcttaatcatttgagaaagaaactttgtcccaacaagctcaag 19665377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 19665328 - 19665278
Alignment:
Q  265 taaaccgtcatcaaagaactggaacattagagaaccatcaccaattggagt 315  Q
    |||||| ||||||||||| ||||| || |||||||||||||| ||||||||    
T  19665328 taaaccatcatcaaagaagtggaaaatgagagaaccatcacctattggagt 19665278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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