View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9360_low_10 (Length: 437)
Name: NF9360_low_10
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Original strand, 56392990 - 56393398
Alignment:
| Q |
14 |
cagagaaaaaattagtaaatacatgacgctcacaagtcatatggtcagtagcccctgtatcgattatccaatctctactcctagtaacaacaaaaagatt |
113 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
56392990 |
cagagaaaaaattagtaaatacatgacgttcacaagtcatatggtcagtagcccctgtatcgattatccaatctctacccctagtaacaacagaaagatt |
56393089 |
T |
|
| Q |
114 |
aagaggagagttagatatacctgacttggttacaaatcctgcagccgtataattattttcttccttattgctagaattattttttccttttggatgccaa |
213 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
56393090 |
aagagcagagttagatatacctgacttggttacgaatcctgcagccgtagaattattttctgccttattgctggaattattttttccttttggatgccaa |
56393189 |
T |
|
| Q |
214 |
tctggatatccatggagtttaaaacatgcttcgactacatgattatcaccattacagtgggtacacttacgaacttctttgttgggatacttcttcacag |
313 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
56393190 |
tctggatatccatggagtttaaaacatgcttccactacatgattatcaccattacagtgggtacacttacgaactcctttcttgggatacttcttcacag |
56393289 |
T |
|
| Q |
314 |
agaaaacagagccctgagtaggctcactaccaagcataacttattggcgattttcttcagcacaaatagttgcatacactgattaaacatttgggagcgg |
413 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
56393290 |
agaaaacagacccctgagtaggctcactaccaagcatagcttcttggcgatttgcttcagcacaaacagttgcatacactgattgaacatttgggagcgg |
56393389 |
T |
|
| Q |
414 |
agtggtagc |
422 |
Q |
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||||||||| |
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| T |
56393390 |
agtggtagc |
56393398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 9 - 422
Target Start/End: Original strand, 27517223 - 27517636
Alignment:
| Q |
9 |
agaagcagagaaaaaattagtaaatacatgacgctcacaagtcatatggtcagtagcccctgtatcgattatccaatctctactcctagtaacaacaaaa |
108 |
Q |
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|||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
27517223 |
agaaccagaggaaaaattagtaaatacatgacgttcacaagtcatatggtcagtagcccctgtatcgattatccaatctctacccctagtaacaacagaa |
27517322 |
T |
|
| Q |
109 |
agattaagaggagagttagatatacctgacttggttacaaatcctgcagccgtataattattttcttccttattgctagaattattttttccttttggat |
208 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| | |||||||||||||||||||||| |
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| T |
27517323 |
agattaagagcagagttagatatacctgacttggttacgaatcctgcagccgtagaattattttctgccttattgatggaattattttttccttttggat |
27517422 |
T |
|
| Q |
209 |
gccaatctggatatccatggagtttaaaacatgcttcgactacatgattatcaccattacagtgggtacacttacgaacttctttgttgggatacttctt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| |
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| T |
27517423 |
gccaatctggatatccatggagtttaaaacatgcttcaactacatgattatcaccattacagtgggtacactaacgaactcctttcttgggatacttctt |
27517522 |
T |
|
| Q |
309 |
cacagagaaaacagagccctgagtaggctcactaccaagcataacttattggcgattttcttcagcacaaatagttgcatacactgattaaacatttggg |
408 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||| |||||||||| |
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| T |
27517523 |
cacagagaaaacagacccctgagtaggctcactaccaagcatagcttcttggcgatttgcttcagcacaaacagttgcatacactgattgaacatttggg |
27517622 |
T |
|
| Q |
409 |
agcggagtggtagc |
422 |
Q |
| |
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|||||||||||||| |
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|
| T |
27517623 |
agcggagtggtagc |
27517636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 20 - 422
Target Start/End: Original strand, 40456939 - 40457353
Alignment:
| Q |
20 |
aaaaattagtaaatacatgacgctcacaagtcatatggtcagtagcccctgtatcgattatccaatctctactcctagtaacaacaaaaagattaagagg |
119 |
Q |
| |
|
||||||||||||||| || | |||||||||||||| |||| ||| |||||||| ||||||||||| ||| | ||||||||||| ||||||||| || |
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| T |
40456939 |
aaaaattagtaaatatgtgtggatcacaagtcatatgatcagaagcacctgtatcaattatccaatcactatccttagtaacaacagaaagattaatagc |
40457038 |
T |
|
| Q |
120 |
agagttagatatacctgacttggttacaaatcctgcagccgtataat------------tattttcttccttattgctagaattattttttccttttgga |
207 |
Q |
| |
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||||||||||||||||||||| ||| |||| || ||||| ||| || ||||||||||||| || | ||| || ||| |||||||| |
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| T |
40457039 |
agagttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttccttgttattggaagtagatttgccttttggg |
40457138 |
T |
|
| Q |
208 |
tgccaatctggatatccatggagtttaaaacatgcttcgactacatgattatcaccattacagtgggtacacttacgaacttctttgttgggatacttct |
307 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| | |||| || |||||||||| |
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| T |
40457139 |
tgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttgcgaattcctttcttaggatacttct |
40457238 |
T |
|
| Q |
308 |
tcacagagaaaacagagccctgagtaggctcactaccaagcataacttattggcgattttcttcagcacaaatagttgcatacactgattaaacatttgg |
407 |
Q |
| |
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| |||| | |||| |||| || |||||||||||||||| ||| |||||||||| | |||||||||| | ||||||| || | || ||| |||| |
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| T |
40457239 |
tgacagcaagggcagacccctcgaaagactcactaccaagcatagcttcttggcgatttgcctcagcacaaacaattgcataaacagcttgaacgcttgg |
40457338 |
T |
|
| Q |
408 |
gagcggagtggtagc |
422 |
Q |
| |
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||| ||||| ||||| |
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| T |
40457339 |
gagtggagttgtagc |
40457353 |
T |
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