View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9360_low_11 (Length: 419)

Name: NF9360_low_11
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9360_low_11
NF9360_low_11
[»] chr7 (8 HSPs)
chr7 (105-262)||(7142483-7142642)
chr7 (261-410)||(7141340-7141489)
chr7 (16-106)||(7143728-7143818)
chr7 (105-194)||(9405377-9405466)
chr7 (106-249)||(10670060-10670205)
chr7 (97-224)||(9070895-9071025)
chr7 (110-172)||(26839717-26839779)
chr7 (144-222)||(3400295-3400375)
[»] chr4 (6 HSPs)
chr4 (105-257)||(47024273-47024427)
chr4 (105-231)||(17024449-17024577)
chr4 (105-244)||(10451002-10451145)
chr4 (105-165)||(12806479-12806539)
chr4 (150-244)||(10319794-10319890)
chr4 (105-224)||(15192700-15192820)
[»] chr5 (5 HSPs)
chr5 (113-249)||(26329585-26329723)
chr5 (105-196)||(12265126-12265217)
chr5 (106-196)||(20715083-20715172)
chr5 (106-186)||(17028776-17028857)
chr5 (131-224)||(25681066-25681161)
[»] scaffold0650 (1 HSPs)
scaffold0650 (105-244)||(5257-5398)
[»] chr3 (4 HSPs)
chr3 (106-243)||(13911745-13911884)
chr3 (131-215)||(33578234-33578320)
chr3 (108-168)||(33914126-33914186)
chr3 (131-224)||(19218745-19218839)
[»] chr1 (4 HSPs)
chr1 (105-249)||(26657936-26658082)
chr1 (106-217)||(23519259-23519370)
chr1 (106-220)||(12810635-12810751)
chr1 (162-224)||(34533099-34533163)
[»] chr8 (4 HSPs)
chr8 (105-194)||(22892762-22892851)
chr8 (105-194)||(11309814-11309903)
chr8 (108-196)||(32239765-32239853)
chr8 (105-220)||(28900845-28900962)
[»] chr6 (2 HSPs)
chr6 (106-196)||(17860003-17860094)
chr6 (105-196)||(30235890-30235981)
[»] scaffold0282 (1 HSPs)
scaffold0282 (105-244)||(22140-22281)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 105 - 262
Target Start/End: Complemental strand, 7142642 - 7142483
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgag 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||| |||    
T  7142642 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgtcagtgttctaaatgaataataatgagtgcaagag 7142543  T
Q  203 tctctatttatagcaaatgattgggtaggatgtaggagaagagaactagtcttttgcact 262  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7142542 tctctatttatagcaaatgattaggtaggatgtaggagaagagaactagtcttttgcact 7142483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 261 - 410
Target Start/End: Complemental strand, 7141489 - 7141340
Alignment:
Q  261 cttaaatcagaatattgcagattttctaaaatgtttgtgaaataggaagtgatcagagaagcaacaaaaccttcacaaccttgaggagacttgaaatgag 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  7141489 cttaaatcagaatattgcagattttctaaaatgtttgtgaaataggaagtgatcagagtagcaacaaaaccttcacaaccttgaggagacgtgaaatgag 7141390  T
Q  361 agcaatgtctcctcactatctaccacgcctagatgtcatacgagtataat 410  Q
    |||||||||||| || || |||||||||||||||||||||||||||||||    
T  7141389 agcaatgtctccccattacctaccacgcctagatgtcatacgagtataat 7141340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 7143818 - 7143728
Alignment:
Q  16 cagatccatctaatgtcgtacctctgcaagttgctccaaagcctctatgttagcttctaccgatgctttccaagattcgttcataccttga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  7143818 cagatccatctaatgtcgtacctctgcaagttgctccaaagcctctatgttagcttctaccgatgctttcctagattccttcataccttga 7143728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 9405377 - 9405466
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatg 194  Q
    ||||||||||||||||||| ||||| |||||||||||||| | |||||||| |||||||||||||||| |||||| |||||| |||||||    
T  9405377 gagagaacaagagaaggaataaatcctgccttgaagctctgacgtttgacccttgtcttgaaccgttattgttctgaatgaaaaataatg 9405466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 106 - 249
Target Start/End: Original strand, 10670060 - 10670205
Alignment:
Q  106 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagt 203  Q
    |||||||||||||| ||| ||||| ||||||||||| || |||||||||| |||  ||||||| | | |||| | |||||| ||||||  ||||| | ||    
T  10670060 agagaacaagagaacgaataaatcctgccttgaagccctgatgtttgacccttgctttgaaccatcaatgttttgaatgaaaaataatgagtgcaagggt 10670159  T
Q  204 ctctatttatagcaaatgattgggtaggatgtaggagaagagaact 249  Q
    |||||||||||| ||||||||||||||| | |||||||||| ||||    
T  10670160 ctctatttatagaaaatgattgggtagggtttaggagaagataact 10670205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 9071025 - 9070895
Alignment:
Q  97 catacctt-gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat-- 193  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||||||| ||| ||||| |||  ||||||||||  ||||| | |||||||||||||      
T  9071025 cataccttagagagaagaagagaaggaagaaatcatgccttgaagctctgatgcttgacattttccttgaaccgtcggtgttttgaatgaataataataa 9070926  T
Q  194 gtgcacgagtctctatttatagcaaatgatt 224  Q
    ||||| | |||||||||||||| ||| ||||    
T  9070925 gtgcaagggtctctatttatagaaaaggatt 9070895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 26839717 - 26839779
Alignment:
Q  110 aacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgtta 172  Q
    |||||||||| ||||||||| |||||||||||||| ||| |||||| ||| ||||||||||||    
T  26839717 aacaagagaatgaagaaatcctgccttgaagctctgatgcttgacccttgccttgaaccgtta 26839779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 3400375 - 3400295
Alignment:
Q  144 taatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagtctctatttatagcaaatga 222  Q
    ||||| |||||| | | |||||||||||||  |||||||||||||| |||  ||||| |||||||||||||||||| ||||    
T  3400375 taatgcttgaccctcgccttgaaccgttagatttctaaatgaataagaatgcgtgcaagagtctctatttatagcatatga 3400295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 105 - 257
Target Start/End: Original strand, 47024273 - 47024427
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgag 202  Q
    |||||||||||||||||||||||||||||||||| ||| | ||| |||||| |||||||||||||| | ||||||||||||||||||||  ||||| | |    
T  47024273 gagagaacaagagaaggaagaaatcttgccttgaggctttgatgcttgacccttgtcttgaaccgtcaatgttctaaatgaataataattagtgcaaggg 47024372  T
Q  203 tctctatttatagcaaatgattgggtaggatgtaggagaagagaactagtctttt 257  Q
    ||||||||||||| |||| |||   |||| |||||||||||| | |||| |||||    
T  47024373 tctctatttatagaaaataattaattagggtgtaggagaagaaatctagactttt 47024427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 17024449 - 17024577
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgag 202  Q
    ||||||||||||||| ||||||||||||||||| |||||  ||| |||||| ||| |||||||||| | |||||| |||||||||||||  ||| | | |    
T  17024449 gagagaacaagagaaagaagaaatcttgccttggagctccgatgcttgacccttgccttgaaccgtcaatgttctgaatgaataataatgagtgtaaggg 17024548  T
Q  203 tctctatttatagcaaatgattgggtagg 231  Q
    |||||||||||||  ||||||| ||||||    
T  17024549 tctctatttatagtgaatgattaggtagg 17024577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 244
Target Start/End: Original strand, 10451002 - 10451145
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacc-tttgtcttgaaccgtta-gtgtt-ctaaatgaataataatgtg--cac 199  Q
    |||||||||| ||||||||||| || |||||||||||||| |||||||||| |||| ||  |||||| | ||||| || |||||||||||||| |  ||     
T  10451002 gagagaacaaaagaaggaagaa-tcctgccttgaagctctgatgtttgaccctttgcctccaaccgtcaagtgtttctgaatgaataataatgagagcaa 10451100  T
Q  200 gagtctctatttatagcaaatgattgggtaggatgtaggagaaga 244  Q
    ||||||| |||||||| ||||||||||||||| | ||||||||||    
T  10451101 gagtctcaatttatagaaaatgattgggtagggtttaggagaaga 10451145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 12806479 - 12806539
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttga 165  Q
    |||||||||| | ||||||||||| ||| ||||||||||| ||||||||||||| ||||||    
T  12806479 gagagaacaacaaaaggaagaaatattgtcttgaagctctgatgtttgacctttttcttga 12806539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 10319794 - 10319890
Alignment:
Q  150 ttgacctttgtcttgaaccgttagtgttctaaatgaataataatg--tgcacgagtctctatttatagcaaatgattgggtaggatgtaggagaaga 244  Q
    |||||| ||| ||| |||||||||||||||  ||||| |||||||  | ||   ||||||||||||||||||||||| |||||| | ||||||||||    
T  10319794 ttgacccttgccttcaaccgttagtgttctggatgaaaaataatgaattcaaatgtctctatttatagcaaatgattaggtagggtttaggagaaga 10319890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 15192820 - 15192700
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtg-ttctaaatgaataataat--gtgcacga 201  Q
    ||||||||||||||| ||||||  ||| |||||||||||||||| |||||| ||| |||| | ||| | || |||| |||||||||||||  || || ||    
T  15192820 gagagaacaagagaacgaagaatcctt-ccttgaagctctaatgcttgacccttgccttg-atcgtcaatgtttctgaatgaataataatgggtacaaga 15192723  T
Q  202 gtctctatttatagcaaatgatt 224  Q
     ||||||||||||| ||||||||    
T  15192722 atctctatttatagaaaatgatt 15192700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 26329585 - 26329723
Alignment:
Q  113 aagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagtctctatt 210  Q
    ||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||| ||||||||||| ||| | ||||||  ||||| | |  ||||||    
T  26329585 aagagaaggaagaaatcctgccttgaagctctaatgcttgacccttgccttgaaccattagtgttctatatggaaaataatgagtgcaagggcatctatt 26329684  T
Q  211 tatagcaaatgattgggtaggatgtaggagaagagaact 249  Q
    ||||||||| ||||||||||| | |||||||||| ||||    
T  26329685 tatagcaaacgattgggtagggtttaggagaagaaaact 26329723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 12265126 - 12265217
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg 196  Q
    ||||||||||||||||||||||||| | ||||||| |||| ||| |||||| ||  ||||||||| | |  |||||||||||||||| ||||    
T  12265126 gagagaacaagagaaggaagaaatcctaccttgaaactctgatgcttgaccattaccttgaaccgctggctttctaaatgaataatattgtg 12265217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 20715172 - 20715083
Alignment:
Q  106 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg 196  Q
    ||||||||||||||||||||| ||||||  ||||||||| ||| |||||| ||||||| |||| | | |||||||||||||| || |||||    
T  20715172 agagaacaagagaaggaagaa-tcttgctctgaagctctgatgcttgacccttgtctttaaccatcaatgttctaaatgaattattatgtg 20715083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 17028857 - 17028776
Alignment:
Q  106 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgtt-ctaaatgaa 186  Q
    ||||||||||  |||||||||||  ||| |||||||||| |||||||||| ||| ||||||| |||| |||| |||||||||    
T  17028857 agagaacaaggtaaggaagaaatactgcattgaagctctgatgtttgacccttgccttgaactgttaatgttactaaatgaa 17028776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 25681161 - 25681066
Alignment:
Q  131 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg--cacgagtctctatttatagcaaatgatt 224  Q
    ||||||||| | |||||| |||||| ||| ||||||||  |||  |||| ||| | ||||||||||  || | |||||||||||||||||||||||    
T  25681161 tgccttgaaaccctaatgcttgacccttgccttgaaccactagctttctgaataattaataatgtgtgcaagtgtctctatttatagcaaatgatt 25681066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 105 - 244
Target Start/End: Original strand, 5257 - 5398
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgag 202  Q
    ||||||||||||||| ||||||||| |||||||||||||| ||| |||||| ||| |||||||||| |||||||| |||||||||||||  ||||| | |    
T  5257 gagagaacaagagaatgaagaaatcctgccttgaagctctgatgcttgacccttgccttgaaccgtcagtgttcttaatgaataataatgagtgcaaggg 5356  T
Q  203 tctctatttatagcaaatgattgggtaggatgtaggagaaga 244  Q
    |||||||||||||  ||| | | |||||| | ||||||||||    
T  5357 tctctatttatagataataactaggtaggttttaggagaaga 5398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 13911884 - 13911745
Alignment:
Q  106 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgagt 203  Q
    |||||||||||||||||| ||||| |||||||||||| | ||  |||||| ||| ||||||| || ||||| || ||| |||||||||  ||||| | ||    
T  13911884 agagaacaagagaaggaaaaaatcatgccttgaagctatgatacttgacccttgccttgaactgtcagtgtcctcaatcaataataatgagtgcaagggt 13911785  T
Q  204 ctctatttatagcaaatgattgggtaggatgtaggagaag 243  Q
    |||||||||||| ||||||||||||||||| | |||||||    
T  13911784 ctctatttatagaaaatgattgggtaggattttggagaag 13911745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 33578320 - 33578234
Alignment:
Q  131 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataata--atgtgcacgagtctctatttatag 215  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||  |||||||||||||| |   |||||| | ||||||||||||||    
T  33578320 tgccttgaagctctaatgtttgaccattgccttgaaccgctagctttctaaatgaataaaagtgtgtgcaagtgtctctatttatag 33578234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 33914126 - 33914186
Alignment:
Q  108 agaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaacc 168  Q
    |||||||||| |||||||||| ||| | |||| |||| |||||||||||||| ||||||||    
T  33914126 agaacaagaggaggaagaaattttgtcatgaaactctgatgtttgacctttgccttgaacc 33914186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 19218745 - 19218839
Alignment:
Q  131 tgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg--cacgagtctctatttatagcaaatgatt 224  Q
    ||||||||| |||| ||| |||||| |||||||||||||||||  || | ||||||||| ||||||  || | |||||||||||||| | ||||||    
T  19218745 tgccttgaa-ctctgatgcttgacccttgtcttgaaccgttagctttattaatgaataagaatgtgtacaagggtctctatttatagaatatgatt 19218839  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 249
Target Start/End: Complemental strand, 26658082 - 26657936
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgag 202  Q
    ||||||||||||||| ||||||||| | |||||||||||| ||| |||||| ||| ||||||| |  |||||||| ||| || ||||||  ||||  | |    
T  26658082 gagagaacaagagaatgaagaaatcattccttgaagctctgatgcttgacccttgccttgaactgccagtgttctgaataaaaaataatgagtgctaggg 26657983  T
Q  203 tctctatttatagcaaatgattgggtaggatgtaggagaagagaact 249  Q
    | |||||||||| |||||||||||||||| | |||||||||| ||||    
T  26657982 tatctatttataacaaatgattgggtagggtttaggagaagaaaact 26657936  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 217
Target Start/End: Original strand, 23519259 - 23519370
Alignment:
Q  106 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataa--tgtgcacgagt 203  Q
    ||||||||||||||||||| |||| | | ||||||||||||||||||||| ||| || | ||||| | |||||||||||||  ||||  |||||| | ||    
T  23519259 agagaacaagagaaggaag-aatcctacgttgaagctctaatgtttgacccttgcctag-accgtcaatgttctaaatgaactataatgtgtgcaagggt 23519356  T
Q  204 ctctatttatagca 217  Q
    ||||||||||||||    
T  23519357 ctctatttatagca 23519370  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 220
Target Start/End: Complemental strand, 12810751 - 12810635
Alignment:
Q  106 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataata--atgtgcacgagt 203  Q
    |||||||||||||| ||  ||||| |||||||||||| | |  ||||||| ||  ||||||  || |||||||| |||||||||||  ||||||| ||||    
T  12810751 agagaacaagagaatgacaaaatcctgccttgaagctttgagttttgaccctttccttgaattgtcagtgttctgaatgaataataatatgtgcaagagt 12810652  T
Q  204 ctctatttatagcaaat 220  Q
     ||||||||||| ||||    
T  12810651 ttctatttatagaaaat 12810635  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 34533163 - 34533099
Alignment:
Q  162 ttgaaccgttagtgttctaaatgaataataa--tgtgcacgagtctctatttatagcaaatgatt 224  Q
    |||||| |||||| |||||||||||||| ||  |||||| ||||||||||||||| || ||||||    
T  34533163 ttgaactgttagttttctaaatgaataagaatgtgtgcaagagtctctatttatatcatatgatt 34533099  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 22892762 - 22892851
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatg 194  Q
    ||||||||||||||||||||||||| | ||||||| |||| ||| |||||| ||| ||||||||||  ||||||| |||||| |||||||    
T  22892762 gagagaacaagagaaggaagaaatccttccttgaaactctgatgcttgacccttgccttgaaccgtccgtgttctgaatgaaaaataatg 22892851  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 11309814 - 11309903
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatg 194  Q
    ||||||||||||| ||||||| | |||| ||||||||||| |||||||||| ||||||||| |    |||||||| ||||||||||||||    
T  11309814 gagagaacaagaggaggaagataacttgtcttgaagctctgatgtttgaccattgtcttgatcttccagtgttctgaatgaataataatg 11309903  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 32239853 - 32239765
Alignment:
Q  108 agaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg 196  Q
    |||||||||| |||| |||||||||||||  | |||||||||||||||||||  |||||||| |||  |||| ||| ||||||||||||    
T  32239853 agaacaagaggaggatgaaatcttgcctttgaactctaatgtttgacctttgcattgaaccgctagctttctgaataaataataatgtg 32239765  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 28900845 - 28900962
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataat--gtgcacgag 202  Q
    |||||||||  |||||||||||||| | |||||||||||| |||| | || ||||  ||||| ||| |||||||||||   ||||||||  |||||   |    
T  28900845 gagagaacacaagaaggaagaaatcctaccttgaagctctgatgtctaacttttgctttgaagcgtcagtgttctaaagccataataatgagtgcaatgg 28900944  T
Q  203 tctctatttatagcaaat 220  Q
    ||||||||||||| ||||    
T  28900945 tctctatttatagaaaat 28900962  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 17860003 - 17860094
Alignment:
Q  106 agagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttcta-aatgaataataatgtg 196  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||||||| |||  ||||||||| | ||||  | ||||||||||||||||    
T  17860003 agagaaccagagaaggaagaaatcatgccttgaagctctgatgtttgacccttgcattgaaccgtcaatgtttaagaatgaataataatgtg 17860094  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 30235890 - 30235981
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtgttctaaatgaataataatgtg 196  Q
    ||||||||||||| ||||||||||| | |||| || |||| |||||||||| || |||||||||| |||| |||| ||| || |||||||||    
T  30235890 gagagaacaagaggaggaagaaatcctaccttaaaactctgatgtttgacccttttcttgaaccgctagttttctgaataaaaaataatgtg 30235981  T

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Target: scaffold0282 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 244
Target Start/End: Original strand, 22140 - 22281
Alignment:
Q  105 gagagaacaagagaaggaagaaatcttgccttgaagctctaatgtttgacctttgtcttgaaccgttagtg-ttctaaatgaataataat--gtgcacga 201  Q
    ||||||| ||||||||||||||||| |||||||||||  | ||| ||||||| |  |||||| |  ||||| |||| |||||| ||||||  | ||| |     
T  22140 gagagaataagagaaggaagaaatcctgccttgaagcgatgatgcttgacctattccttgaa-ctatagtgtttctgaatgaaaaataatgagagcaagg 22238  T
Q  202 gtctctatttatagcaaatgattgggtaggatgtaggagaaga 244  Q
    ||||||| ||| | |||||||||||||||||| ||||||||||    
T  22239 gtctctagttaaatcaaatgattgggtaggatttaggagaaga 22281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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