View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9360_low_18 (Length: 337)
Name: NF9360_low_18
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 31060626 - 31060780
Alignment:
| Q |
15 |
tagaggtaaacttgtgtccggatcggtgcagaa--ggttgctcagacgtcaaaagctccagcgaaaagaaaggtaaaataaatacatacacttattatca |
112 |
Q |
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| T |
31060626 |
tagaggtaaacttgtgtccggatcggtgcagaaaaggttgctcaaacgtcaaaagctccagcaaaaagaaaggtaaaataaatacatacacttattatca |
31060725 |
T |
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| Q |
113 |
tgggtataaaatgggtggtatgatttgatggtgttgtcttgtactagtattatta |
167 |
Q |
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| T |
31060726 |
tgggtataaaatgggtggtatgatttgatggtgttgtcttgtactagtattatta |
31060780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 178 - 322
Target Start/End: Original strand, 31061166 - 31061311
Alignment:
| Q |
178 |
tgtggattactttgaattgttgaatttagttttgaaattgttatttgtccttaatt-ttaagatttctgacagttaaatgtataaatatatgtttaagta |
276 |
Q |
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| T |
31061166 |
tgtggattactttgaattgttgaatttagttttgaaattgacatttatcctacattgtttagatttctcacagttaaatgtataaatatatatttgagta |
31061265 |
T |
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| Q |
277 |
tcatcttcttttgagttagtttttagaatgagattcaagcctattt |
322 |
Q |
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| T |
31061266 |
tcatcatcttttgagttagcttttagaatgagattcaagcctattt |
31061311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 6423998 - 6424048
Alignment:
| Q |
264 |
atatgtttaagtatcatcttcttttgagttagtttttagaatgagattcaa |
314 |
Q |
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| T |
6423998 |
atatgtttgagtatcatcatcttttaagctagtttttaggatgagattcaa |
6424048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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