View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9360_low_24 (Length: 306)
Name: NF9360_low_24
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 21130691 - 21130971
Alignment:
| Q |
19 |
tacttcagcaagaaactctccttctccttgtttagcttcattcaatctctttattgctgcatctctttgatctggcaatgtacctctatatacaactcct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21130691 |
tacttcagcaagaaactctccttctccttgtttagcttcattcaatctctttattgctgcatctctttgatccggcaatgtacctctatatacaactcct |
21130790 |
T |
|
| Q |
119 |
cctccacctcttccaatctcgttactgaaattttttgtcgctaccttcaactcggagtaagtgtatcttctgaatcccaataatgtaagatgatagctat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21130791 |
cctccacctcttccaatctcgttactgaaattttttgtcgctaccttcaactcggagtaagtgtatcttctgaatcctaataatgtaagatgatagctat |
21130890 |
T |
|
| Q |
219 |
gttgatttgcactagaatttttcctggtcttaattaaaaaaccacaaaccattaagaaacaaactaattctaaaccaccaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21130891 |
gttgatttgcactagaatttttcctggtcttaattaaaaaaccacaaaccattaagaaacaaactaattctaaaccaccaa |
21130971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 18658853 - 18659102
Alignment:
| Q |
19 |
tacttcagcaagaaactctccttctccttgtttagcttcattcaatctctttattgctgcatctctttgatctggcaatgtacctctatatacaactcct |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
18658853 |
tacttcagcaagaaattctccttctccttgtttagcttcatttaatctctttattgctgcatgtctttgatctggcaatgtacctctatatacaatccct |
18658952 |
T |
|
| Q |
119 |
cctccacctcttccaatctcgttactgaaattttttgtcgctaccttcaactcggagtaagtgtatcttctgaatcccaataatgtaagatgatagctat |
218 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| |||| |||||||||||||||| | ||||||||||||||||||||| | |||||||| ||| |
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| T |
18658953 |
cctccacctcttccaatctcattactgaaattctttgttgctatcttcaactcggagtaactatatcttctgaatcccaataatacatgatgatagttat |
18659052 |
T |
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| Q |
219 |
gttgatttgcactagaatttttcctggtcttaattaaaaaaccacaaacc |
268 |
Q |
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|||||| | |||||||||||||| |||||||||||||||||||||||||| |
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| T |
18659053 |
gttgatctccactagaatttttcttggtcttaattaaaaaaccacaaacc |
18659102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 21111731 - 21111981
Alignment:
| Q |
19 |
tacttcagcaagaaactctccttctccttgtttagcttcattcaatctctttattgctgcatctctttgatctggcaatgtacctctatatacaactcct |
118 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||| |
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| T |
21111731 |
tacttcggcaagaaattctccttctccttgtttagcttcatttaatctctttattgctacatgtctttcatctggcaatgtacctctatatacaatccct |
21111830 |
T |
|
| Q |
119 |
cctccacctcttccaatctcgttactgaaattttttgtcgctaccttcaactcggagtaagtgtatcttctgaatcccaataatgtaagatgatagctat |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||| |||||||||||||||| |||||||||||||||| ||||||| | |||||||| ||| |
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| T |
21111831 |
cctccacctcttccaatctcattactgaaattctttgttgctatcttcaactcggagtaactgtatcttctgaatccaaataatgcatgatgatagttat |
21111930 |
T |
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| Q |
219 |
gttgatttgcactagaatttttcctggtcttaattaaaaaaccacaaacca |
269 |
Q |
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|| ||| | || ||| |||||| |||||| |||||||||| |||||||| |
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| T |
21111931 |
gtcgatctccattaggctttttctcggtcttgattaaaaaacaacaaacca |
21111981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 39132045 - 39131765
Alignment:
| Q |
19 |
tacttcagcaagaaactctccttctccttgtttagcttcattcaatctctttattgctgcatctctttgatctggcaatgtacctctatatacaactcct |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||||| ||| |
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| T |
39132045 |
tacttcagcaagaaactctccttccccttgattagcttcattcaatctctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccct |
39131946 |
T |
|
| Q |
119 |
cctccacctcttccaatctcgttactgaaattttttgtcgctaccttcaactcggagtaagtgtatcttctgaatcccaataatgtaagatgatagctat |
218 |
Q |
| |
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||||| ||| |||||||||| ||||||||||| || || || ||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
39131945 |
cctccgccttttccaatctcattactgaaattcttggttgccaccttcaactccgagtaactgtatcttctgaatcccaataatgtatgatgatagctat |
39131846 |
T |
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| Q |
219 |
gttgatttgcactagaatttttcctggtcttaattaaaaaaccacaaaccattaagaaacaaactaattctaaaccaccaa |
299 |
Q |
| |
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||||| | | ||| |||||| ||||||| | ||||||| || |||||| || || ||||||||||| |||| ||||| |
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| T |
39131845 |
tttgatccgaagtagtttttttcgtggtcttgaataaaaaaacaaaaaccacaaaaaagcaaactaattcaaaacaaccaa |
39131765 |
T |
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