View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9360_low_28 (Length: 288)
Name: NF9360_low_28
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 30234291 - 30234559
Alignment:
| Q |
8 |
gagatggacatcactattttgcaacagatgatgctctatccgttaaattccttctagttttcttttcctcatcttaaatgagnnnnnnnnnnnncttgct |
107 |
Q |
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| T |
30234291 |
gagatggccaaccctattttgcaacagatgatgctctatccattaaattccttctagttttcatttcttcatcttaaatgagttttttcttgttcttgct |
30234390 |
T |
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| Q |
108 |
ttaaaagaaacataactcttatatcctggtctttattataccactattatcaatgacatagtattcatctaggagagaatttattgtattgacatagacc |
207 |
Q |
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| T |
30234391 |
ttaaaagaaacataactcttatatcctggtctttattataccactattatcaatgacatagtattcatctaggagagaatttattgtattgacatagacc |
30234490 |
T |
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| Q |
208 |
taacacatagcattaagactcaacaattcgttggttaaaacatatcttgttagctgaat-ccacttgat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30234491 |
taacacatagcattaagactcaacaattcgttggttaaaacatatcttgttagctgaataccacttgat |
30234559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 31700573 - 31700743
Alignment:
| Q |
24 |
ttttgcaacagatgatgctctatccgttaaattccttctagttttcttttcctcatcttaaatgagnnnnnnnnnnnncttgctttaaaagaaacataac |
123 |
Q |
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| T |
31700573 |
ttttgcaacagataatgctttgtccattaaattccttctacttttcatttcttcatcttaaatgagatctttttttt-cttgctttaaaagaaacataac |
31700671 |
T |
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| Q |
124 |
tcttatatcctggtctttattataccactattatcaatgacatagtattcatctaggagagaatttattgtatt |
197 |
Q |
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| T |
31700672 |
tcttatctcctggtcttcataataccactattatcaatg--atagtattcatctaagagagaatttattgtatt |
31700743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 31682576 - 31682675
Alignment:
| Q |
137 |
tctttattataccactattatcaatgacatagtattcatctaggagagaatttattgtattgacatagacctaacacatagcattaagactcaacaattc |
236 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||| |||||||||| ||||||||||||||||||||| |
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| T |
31682576 |
tctttattataccactattatcaatgacatagcattcatctaagagagaatttcttgtgttgacataaacctaacacacagcattaagactcaacaattc |
31682675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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