View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9360_low_29 (Length: 280)
Name: NF9360_low_29
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 50 - 263
Target Start/End: Complemental strand, 47948041 - 47947828
Alignment:
| Q |
50 |
aatcttaacaatctttgcagcggataccagattttcttcttgaatcccaaagttcaagtacaagaggtgctaccaatgcaagcactgatgtgtttcagac |
149 |
Q |
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| T |
47948041 |
aatcttaacaatctttgcagcggataccagattttcttcttgaatcccagagttcaagtacaagaggtgctaccaatgcaagcactgatgtgtttcagac |
47947942 |
T |
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| Q |
150 |
atggcagaaaagtggaagttgtccaaaagaaactgtacctattcgtagaattcgaaaggaggacttgttaagagctgtttcacttaaccgcttcggacaa |
249 |
Q |
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| T |
47947941 |
atggcagaaaagtggaagttgtccaaaagaaactgtacctattcgtagaattcgaaaggaggacttgttaagagctgtttcacttaaccgcttcggacaa |
47947842 |
T |
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| Q |
250 |
aaacctccggaacc |
263 |
Q |
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|||||||||||||| |
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| T |
47947841 |
aaacctccggaacc |
47947828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 71 - 264
Target Start/End: Complemental strand, 47942080 - 47941887
Alignment:
| Q |
71 |
ggataccagattttcttcttgaatcccaaagttcaagtacaagaggtgctaccaatgcaagcactgatgtgtttcagacatggcagaaaagtggaagttg |
170 |
Q |
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| T |
47942080 |
ggatacctgcttttcttcttggatcccaaagttcaagcacaaaagttacttcaaatgcaagctctaatgtgtttcaaacatggacgaaaagcggaagttg |
47941981 |
T |
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| Q |
171 |
tccaaaagaaactgtacctattcgtagaattcgaaaggaggacttgttaagagctgtttcacttaaccgcttcggacaaaaacctccggaacct |
264 |
Q |
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| T |
47941980 |
tccaaaaggaaccgtacctattcgtagaattcaaaaggatgacttgttgagagctgtttcacttgatcgatttggacaaaaacccccggaacct |
47941887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 55 - 255
Target Start/End: Complemental strand, 47929725 - 47929525
Alignment:
| Q |
55 |
taacaatctttgcagcggataccagattttcttcttgaatcccaaagttcaagtacaagaggtgctaccaatgcaagcactgatgtgtttcagacatggc |
154 |
Q |
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| T |
47929725 |
taacaaactctgcagaggatacccgattttcttcttgaatcacaaagttcaagcatgggagttacttcaaacacgagctctgatgtgtttcaaacatgga |
47929626 |
T |
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| Q |
155 |
agaaaagtggaagttgtccaaaagaaactgtacctattcgtagaattcgaaaggaggacttgttaagagctgtttcacttaaccgcttcggacaaaaacc |
254 |
Q |
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| T |
47929625 |
cgaaaagtggaagttgtccagaagaaactgttcctatacgaagaattcgaaaagaggacttgctcagagctgtttcacttgaccgcttcggacaaaaacc |
47929526 |
T |
|
| Q |
255 |
t |
255 |
Q |
| |
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| T |
47929525 |
t |
47929525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 74 - 255
Target Start/End: Complemental strand, 47910749 - 47910568
Alignment:
| Q |
74 |
taccagattttcttcttgaatcccaaagttcaagtacaagaggtgctaccaatgcaagcactgatgtgtttcagacatggcagaaaagtggaagttgtcc |
173 |
Q |
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|||| ||||||||||||||||||||||||||||| || ||| | || | || ||||| ||||||||||||| |||||| |||||||||||||||||| |
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| T |
47910749 |
tacccgattttcttcttgaatcccaaagttcaagcactggagttacttcaaactcaagctctgatgtgtttcaaacatggacgaaaagtggaagttgtcc |
47910650 |
T |
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| Q |
174 |
aaaagaaactgtacctattcgtagaattcgaaaggaggacttgttaagagctgtttcacttaaccgcttcggacaaaaacct |
255 |
Q |
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| T |
47910649 |
agaagaaactgttccaataagaagaattagaaaagaggacttgctgagagctgtttcacttgaccgcttcggacaaaaacct |
47910568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 47921253 - 47921141
Alignment:
| Q |
145 |
cagacatggcagaaaagtggaagttgtccaaaagaaactgtacctattcgtagaattcgaaaggaggacttgttaagagctgtttcacttaaccgcttcg |
244 |
Q |
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| T |
47921253 |
cagacatggcagaaaagtggaagttgtccagaagaaactgtccctattcgaagaattcggaaagaagacttgttgagagctgtttcacttgctcgcttcg |
47921154 |
T |
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| Q |
245 |
gacaaaaacctcc |
257 |
Q |
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| T |
47921153 |
gacaaaaacctcc |
47921141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 3859168 - 3859231
Alignment:
| Q |
144 |
tcagacatggcagaaaagtggaagttgtccaaaagaaactgtacctattcgtagaattcgaaag |
207 |
Q |
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| T |
3859168 |
tcagacatggcataaaagtggaaggtgtccaaaaggaactgtccccattcgaagaattcaaaag |
3859231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 4555296 - 4555353
Alignment:
| Q |
150 |
atggcagaaaagtggaagttgtccaaaagaaactgtacctattcgtagaattcgaaag |
207 |
Q |
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||||||||||||||||||||||||||| | ||| ||||| |||| ||||| |||||| |
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| T |
4555296 |
atggcagaaaagtggaagttgtccaaagggaacaatacctgttcgaagaatacgaaag |
4555353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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