View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9360_low_3 (Length: 631)
Name: NF9360_low_3
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_3 |
 |  |
|
| [»] scaffold1207 (1 HSPs) |
 |  |  |
|
| [»] scaffold0734 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 11170778 - 11171240
Alignment:
| Q |
19 |
ttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11170778 |
ttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagc |
11170877 |
T |
 |
| Q |
119 |
acccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | | ||| |||||| |
|
|
| T |
11170878 |
acccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactattgatccaaggaaggtttctgctatc |
11170977 |
T |
 |
| Q |
219 |
tcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggt |
318 |
Q |
| |
|
||| |||||| |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11170978 |
tcgcgcattttcaccaataccatggatgagatttcttcagcagcaaaatgtttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggt |
11171077 |
T |
 |
| Q |
319 |
caccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11171078 |
caccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagag |
11171177 |
T |
 |
| Q |
419 |
agttgtgtacactatgnnnnnnnnttggatcgctttatgaattaatcattctatgtggatttg |
481 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11171178 |
agttgtgtacactatgaaaaacaattggatcgctttatgaattaatcattctatgtggatttg |
11171240 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 11209600 - 11210012
Alignment:
| Q |
19 |
ttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagc |
118 |
Q |
| |
|
|||||| |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11209600 |
ttctacgtccatgattaaatggtttcatgccaaagccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagc |
11209699 |
T |
 |
| Q |
119 |
acccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||| ||| || |
|
|
| T |
11209700 |
acccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcatccactgttgatccaaggaaggcttctgctgtc |
11209799 |
T |
 |
| Q |
219 |
tcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggt |
318 |
Q |
| |
|
|| |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
11209800 |
tctcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtttgtcatttaggt |
11209899 |
T |
 |
| Q |
319 |
caccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagag |
418 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11209900 |
cgccaattactttgaatggccacaacttcacatcactttctactatggggtcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagag |
11209999 |
T |
 |
| Q |
419 |
agttgtgtacact |
431 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11210000 |
agttgtgtacact |
11210012 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 414
Target Start/End: Original strand, 11196932 - 11197326
Alignment:
| Q |
20 |
tctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagca |
119 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
11196932 |
tctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataaca |
11197031 |
T |
 |
| Q |
120 |
cccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatct |
219 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11197032 |
cccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatct |
11197131 |
T |
 |
| Q |
220 |
cggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
11197132 |
cggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtc |
11197231 |
T |
 |
| Q |
320 |
accaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaa |
414 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||||||||||| || | |||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11197232 |
gccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttgcatctacaaaacaaa |
11197326 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 11276162 - 11276562
Alignment:
| Q |
19 |
ttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| | |||||||||||| || |||||||||||||| |
|
|
| T |
11276162 |
ttctacatccatgattaaatggtttcgtgttaaagccatatgcaattgcagctgcagtaggctcatttattattcgcataacgtttaggccagcaatagc |
11276261 |
T |
 |
| Q |
119 |
acccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatc |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | ||||| |||||| |
|
|
| T |
11276262 |
acccgcatctcgagtagactggcgctgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttaatccaaggaaggcttctgctatc |
11276361 |
T |
 |
| Q |
219 |
tcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggt |
318 |
Q |
| |
|
||| |||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11276362 |
tcgcgcattttcgccaataccatggatgagatttcttcagcagtaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggt |
11276461 |
T |
 |
| Q |
319 |
caccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11276462 |
caccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagag |
11276561 |
T |
 |
| Q |
419 |
a |
419 |
Q |
| |
|
| |
|
|
| T |
11276562 |
a |
11276562 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 22 - 434
Target Start/End: Original strand, 11156481 - 11156895
Alignment:
| Q |
22 |
tacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacc |
121 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
11156481 |
tacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacc |
11156580 |
T |
 |
| Q |
122 |
cgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcg |
221 |
Q |
| |
|
||||||| | || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11156581 |
cgcatcttgggtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaaacttcagctatctcg |
11156680 |
T |
 |
| Q |
222 |
gccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcac |
321 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| | |
|
|
| T |
11156681 |
gccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtttgtcattgaggttgc |
11156780 |
T |
 |
| Q |
322 |
caattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaa--aagaga |
419 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||||||||| || | |||||||| |||| ||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
11156781 |
caattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttgcatctacaaaacaaacaaaaga |
11156880 |
T |
 |
| Q |
420 |
gttgtgtacactatg |
434 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
11156881 |
gttgagtacactatg |
11156895 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 414
Target Start/End: Complemental strand, 11241405 - 11241005
Alignment:
| Q |
20 |
tctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagca |
119 |
Q |
| |
|
||||||||||||||||| | ||||| || ||||||||||||||||||| |||||||||||||| ||| ||||| || ||| |||||||||||||||||| |
|
|
| T |
11241405 |
tctacatccatgattaagagttttcatgttaaggccatatgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagca |
11241306 |
T |
 |
| Q |
120 |
cccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatct |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11241305 |
cccgcatctcgaatagactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatct |
11241206 |
T |
 |
| Q |
220 |
cggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtc |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||||||||||||||| |
|
|
| T |
11241205 |
tggccatttttgccaataccatcgatgagatttcttcagcagcgaaatgcttttcctcgtcattatagttaacaatagtcatgtgtttgtcattcaggtc |
11241106 |
T |
 |
| Q |
320 |
accaattactttgaatggccacaacttcacatcactttgtactatgggatcgca------aaatttccgaccaattagcctctttgcatctacaaaacaa |
413 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| ||||| || || ||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11241105 |
gccaattactttgaagggccacaacttcatatcactttgtatgatggggtcacaaaacttaaacttcctaccaattagcctctttgcatctacaaaacaa |
11241006 |
T |
 |
| Q |
414 |
a |
414 |
Q |
| |
|
| |
|
|
| T |
11241005 |
a |
11241005 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 11200096 - 11200394
Alignment:
| Q |
19 |
ttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagc |
118 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
11200096 |
ttctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagc |
11200195 |
T |
 |
| Q |
119 |
acccgcatctcgagtagactggcgt----tgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagc |
214 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11200196 |
acccgcatctcaagtagactggcgtacgttgtgaatcattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttcagc |
11200295 |
T |
 |
| Q |
215 |
tatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcatt |
313 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11200296 |
aatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcatt |
11200394 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 22 - 313
Target Start/End: Original strand, 11161348 - 11161651
Alignment:
| Q |
22 |
tacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggct--------cattgagtattcgcataacattgaggccagca |
113 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||||||||||||| |||||||||||| |||||| || |||||||||||| |||||| || |
|
|
| T |
11161348 |
tacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcatctgcagtaggctagtagagtcattgattactcgcataacattaaggccaaca |
11161447 |
T |
 |
| Q |
114 |
atagcacccgcatctcgagtagactggcgt----tgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11161448 |
atagcacccgcatctcgagtagactggcgtacgttgtgaaacattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagct |
11161547 |
T |
 |
| Q |
210 |
tcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgt |
309 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11161548 |
tcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgt |
11161647 |
T |
 |
| Q |
310 |
catt |
313 |
Q |
| |
|
|||| |
|
|
| T |
11161648 |
catt |
11161651 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 28 - 410
Target Start/End: Original strand, 11133211 - 11133593
Alignment:
| Q |
28 |
catgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
127 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||||||||||||||| |||||||| |||| |||||||||||| ||||| || |||||| |||| ||||| |
|
|
| T |
11133211 |
catgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatc |
11133310 |
T |
 |
| Q |
128 |
tcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatt |
227 |
Q |
| |
|
|| ||||| |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||| || ||||| ||| |
|
|
| T |
11133311 |
tctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatctcacgaatt |
11133410 |
T |
 |
| Q |
228 |
tttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaatta |
327 |
Q |
| |
|
|||| ||||||||| ||||||||||| |||||||||||||| |||||||| |||| || || |||||||| | ||||||||||| | | ||||||||| |
|
|
| T |
11133411 |
tttgtcaataccattgatgatatttcctcagcagcaaaatgtttttcctctccattgtaattgacaacaatattgggtttgtcatttatgccaccaatta |
11133510 |
T |
 |
| Q |
328 |
ctttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaa |
410 |
Q |
| |
|
|||| ||||||||||| |||| |||||| || ||||| || || | ||||| | |||||| |||||||| |||||||||||| |
|
|
| T |
11133511 |
ctttaaatggccacaatttcatatcactctgaactatagggtcactaaattctctaccaatgagcctcttcgcatctacaaaa |
11133593 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 551 - 621
Target Start/End: Original strand, 11171312 - 11171382
Alignment:
| Q |
551 |
ttaaccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagctcctatg |
621 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11171312 |
ttaaccccgtaagtaatacaatcttgggattttggtcccttataaaaaacaataacaaatcagctcctatg |
11171382 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 8382104 - 8382149
Alignment:
| Q |
568 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaatcag |
613 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||||||||||| |
|
|
| T |
8382104 |
acaatcttgcaattttgatcccttataaaaaacaataacaaatcag |
8382149 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 250; Significance: 1e-138; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 47 - 480
Target Start/End: Original strand, 1121 - 1538
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgt |
146 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
1121 |
gtcaaagccatatgcaattgcagctgcagtaggctcattgagtattcccaaaacattgaggccagcaatagcacctgcatctcgagtagattggcgttgt |
1220 |
T |
 |
| Q |
147 |
gagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||| ||||| |||||| ||||||||||| |||| |
|
|
| T |
1221 |
gagtcattaaagtatgcaggcacagttataacaacatcctccactgttgatccaaggaaggcttctgctgtctcgcgcattttcgccaataccatggatg |
1320 |
T |
 |
| Q |
247 |
atatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaactt |
346 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||| |
|
|
| T |
1321 |
agatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttat------------------gtatgaatggccacaactt |
1402 |
T |
 |
| Q |
347 |
cacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatg--nnnnnnnntt |
444 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1403 |
cacatcactttctactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgaaaaaaacaatt |
1502 |
T |
 |
| Q |
445 |
ggatcgctttatgaattaatcattctatgtggattt |
480 |
Q |
| |
|
| ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
1503 |
gtatcgctttatgtattaatcattttatgtggattt |
1538 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 8382805 - 8382727
Alignment:
| Q |
50 |
aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
128 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
8382805 |
aaggccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct |
8382727 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 8602213 - 8602291
Alignment:
| Q |
50 |
aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
128 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||| |||||||| |||||||| ||||| |||||| |
|
|
| T |
8602213 |
aaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct |
8602291 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 13333388 - 13333307
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
128 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||| |||||| || | ||| ||||||||||||||||| |||||| |
|
|
| T |
13333388 |
gtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct |
13333307 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 10494306 - 10494226
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
127 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||||||| ||||| |
|
|
| T |
10494306 |
gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc |
10494226 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 8585638 - 8585558
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
127 |
Q |
| |
|
|||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
8585638 |
gtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatc |
8585558 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 614
Target Start/End: Original strand, 2407345 - 2407404
Alignment:
| Q |
555 |
ccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
614 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
2407345 |
ccccctaagtatcacaatcttgcgattttggtcccctataaaaaacaataacaaatcagc |
2407404 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 8628768 - 8628847
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcat |
126 |
Q |
| |
|
|||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| |||| |
|
|
| T |
8628768 |
gtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcat |
8628847 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 568 - 614
Target Start/End: Original strand, 7875716 - 7875762
Alignment:
| Q |
568 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
614 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
7875716 |
acaatcttgcgattttggtcccctataaaaaacaataacaaatcagc |
7875762 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 27830807 - 27830733
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacc |
121 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||| | | ||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
27830807 |
gtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaatggcacc |
27830733 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 29577594 - 29577532
Alignment:
| Q |
54 |
ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaata |
116 |
Q |
| |
|
|||||||||| |||||| ||||| || ||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
29577594 |
ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaata |
29577532 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 8654686 - 8654767
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
128 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||||||| || || || || || |||||||| ||||| |||||| |
|
|
| T |
8654686 |
gtcaaggccatatgcaatagctgcggcagtaggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatct |
8654767 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 8667655 - 8667736
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
128 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| |||||| |
|
|
| T |
8667655 |
gtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatct |
8667736 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 6789749 - 6789829
Alignment:
| Q |
48 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
128 |
Q |
| |
|
|||||||||||||||| ||||| || || || ||||||| |||||| |||||||| || |||||||| ||||| |||||| |
|
|
| T |
6789749 |
tcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatct |
6789829 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 8671562 - 8671482
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
127 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| ||||| |
|
|
| T |
8671562 |
gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatc |
8671482 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 554 - 614
Target Start/End: Original strand, 40352657 - 40352717
Alignment:
| Q |
554 |
accccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
614 |
Q |
| |
|
||||| |||||| ||||||||| |||||||||| | | |||||||||||||||||||||| |
|
|
| T |
40352657 |
accccctaagtatcacaatcttgcgattttggtcgcctataaaaaacaataacaaatcagc |
40352717 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 3147515 - 3147589
Alignment:
| Q |
54 |
ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
128 |
Q |
| |
|
||||| ||||| || || |||||||| ||||||| ||| ||||||| ||| |||||||||||| |||| |||||| |
|
|
| T |
3147515 |
ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatct |
3147589 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 7877662 - 7877584
Alignment:
| Q |
50 |
aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
128 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||||| | ||| ||||||||||||||||| |||| ||||| |||||| |
|
|
| T |
7877662 |
aaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatct |
7877584 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 8538275 - 8538353
Alignment:
| Q |
50 |
aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
128 |
Q |
| |
|
|||||| ||||||| ||||| || ||||| ||||||| ||| ||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
8538275 |
aaggccgtatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatct |
8538353 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 610
Target Start/End: Original strand, 41415672 - 41415714
Alignment:
| Q |
568 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaat |
610 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
41415672 |
acaatcttgcgattttggccccttataaaaaacaataacaaat |
41415714 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0734 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0734
Description:
Target: scaffold0734; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 560 - 614
Target Start/End: Original strand, 1908 - 1962
Alignment:
| Q |
560 |
taagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
614 |
Q |
| |
|
||||||| ||||||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
1908 |
taagtaacacaatcttgagattttggtcccctataaaaaacaataacaaatcagc |
1962 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0734; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 6714 - 6770
Alignment:
| Q |
377 |
tttccgaccaattagcctctttgcatctacaaaacaaa-ag-agagttgtgtacact |
431 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
6714 |
tttccaaccaattagcctctttgcatctacaaaacaaacagaagagttgtgtacact |
6770 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 9335822 - 9335742
Alignment:
| Q |
48 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
128 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||| ||| |||||| |
|
|
| T |
9335822 |
tcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatct |
9335742 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 30775489 - 30775568
Alignment:
| Q |
48 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
127 |
Q |
| |
|
||||| ||||||||||| || |||||||| |||||||| | ||||| ||||||||| || |||||||| ||||| ||||| |
|
|
| T |
30775489 |
tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc |
30775568 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 35132684 - 35132765
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
128 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||| | || || |||||||||| | |||||||||||||| |||||| |
|
|
| T |
35132684 |
gtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatct |
35132765 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 7542462 - 7542543
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
128 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||| | | | ||||||||||||||||||||| |||||||||||| |
|
|
| T |
7542462 |
gtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatct |
7542543 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 16661924 - 16661844
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
127 |
Q |
| |
|
|||||||||||||||||| || |||||||| || ||||||| ||| | || ||| || ||||||||||| ||||| ||||| |
|
|
| T |
16661924 |
gtcaaggccatatgcaatagctgctgcagtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatc |
16661844 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 16657449 - 16657368
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
128 |
Q |
| |
|
|||||| ||||||||||| || || |||||||| ||||||| ||||| || ||||| |||||||| || ||||| |||||| |
|
|
| T |
16657449 |
gtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatct |
16657368 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 14703644 - 14703724
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
127 |
Q |
| |
|
|||||||||||||||||| || || || ||||| ||||| | || | ||||||||||||||| |||||| |||| ||||| |
|
|
| T |
14703644 |
gtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatc |
14703724 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 612
Target Start/End: Original strand, 5003527 - 5003571
Alignment:
| Q |
568 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaatca |
612 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
5003527 |
acaatcttgcgattttgatcccttataaaaaacaataacaaatca |
5003571 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 34466725 - 34466645
Alignment:
| Q |
47 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
127 |
Q |
| |
|
|||||| ||||||||||| || || ||||| || ||||||| |||| ||| |||||| ||||||||||||| ||| ||||| |
|
|
| T |
34466725 |
gtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatc |
34466645 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 614
Target Start/End: Original strand, 33096059 - 33096104
Alignment:
| Q |
569 |
caatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
614 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
33096059 |
caatcttgcaattttggtcccttataaaaaataataacaaatcagc |
33096104 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 15595516 - 15595571
Alignment:
| Q |
288 |
ttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaactt |
346 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
15595516 |
ttaacaataatcatgggtttgtcattca---caccaatgaccttgaatggccacaactt |
15595571 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 614
Target Start/End: Original strand, 18896459 - 18896505
Alignment:
| Q |
568 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
614 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
18896459 |
acaatcttgcgattttggtcccctataaaaaacaataataaatcagc |
18896505 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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