View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9360_low_3 (Length: 631)

Name: NF9360_low_3
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9360_low_3
NF9360_low_3
[»] chr6 (11 HSPs)
chr6 (19-481)||(11170778-11171240)
chr6 (19-431)||(11209600-11210012)
chr6 (20-414)||(11196932-11197326)
chr6 (19-419)||(11276162-11276562)
chr6 (22-434)||(11156481-11156895)
chr6 (20-414)||(11241005-11241405)
chr6 (19-313)||(11200096-11200394)
chr6 (22-313)||(11161348-11161651)
chr6 (28-410)||(11133211-11133593)
chr6 (551-621)||(11171312-11171382)
chr6 (568-613)||(8382104-8382149)
[»] scaffold1207 (1 HSPs)
scaffold1207 (47-480)||(1121-1538)
[»] chr7 (19 HSPs)
chr7 (50-128)||(8382727-8382805)
chr7 (50-128)||(8602213-8602291)
chr7 (47-128)||(13333307-13333388)
chr7 (47-127)||(10494226-10494306)
chr7 (47-127)||(8585558-8585638)
chr7 (555-614)||(2407345-2407404)
chr7 (47-126)||(8628768-8628847)
chr7 (568-614)||(7875716-7875762)
chr7 (47-121)||(27830733-27830807)
chr7 (54-116)||(29577532-29577594)
chr7 (47-128)||(8654686-8654767)
chr7 (47-128)||(8667655-8667736)
chr7 (48-128)||(6789749-6789829)
chr7 (47-127)||(8671482-8671562)
chr7 (554-614)||(40352657-40352717)
chr7 (54-128)||(3147515-3147589)
chr7 (50-128)||(7877584-7877662)
chr7 (50-128)||(8538275-8538353)
chr7 (568-610)||(41415672-41415714)
[»] scaffold0734 (2 HSPs)
scaffold0734 (560-614)||(1908-1962)
scaffold0734 (377-431)||(6714-6770)
[»] chr4 (3 HSPs)
chr4 (48-128)||(9335742-9335822)
chr4 (48-127)||(30775489-30775568)
chr4 (47-128)||(35132684-35132765)
[»] chr2 (4 HSPs)
chr2 (47-128)||(7542462-7542543)
chr2 (47-127)||(16661844-16661924)
chr2 (47-128)||(16657368-16657449)
chr2 (47-127)||(14703644-14703724)
[»] chr5 (1 HSPs)
chr5 (568-612)||(5003527-5003571)
[»] chr1 (3 HSPs)
chr1 (47-127)||(34466645-34466725)
chr1 (569-614)||(33096059-33096104)
chr1 (288-346)||(15595516-15595571)
[»] chr8 (1 HSPs)
chr8 (568-614)||(18896459-18896505)


Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 11170778 - 11171240
Alignment:
19 ttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
11170778 ttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagc 11170877  T
119 acccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | | ||| ||||||    
11170878 acccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactattgatccaaggaaggtttctgctatc 11170977  T
219 tcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggt 318  Q
    |||  ||||||  |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
11170978 tcgcgcattttcaccaataccatggatgagatttcttcagcagcaaaatgtttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggt 11171077  T
319 caccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagag 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
11171078 caccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagag 11171177  T
419 agttgtgtacactatgnnnnnnnnttggatcgctttatgaattaatcattctatgtggatttg 481  Q
    ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
11171178 agttgtgtacactatgaaaaacaattggatcgctttatgaattaatcattctatgtggatttg 11171240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 11209600 - 11210012
Alignment:
19 ttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagc 118  Q
    |||||| |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
11209600 ttctacgtccatgattaaatggtttcatgccaaagccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagc 11209699  T
119 acccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||| ||| ||    
11209700 acccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcatccactgttgatccaaggaaggcttctgctgtc 11209799  T
219 tcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggt 318  Q
    ||   |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||    
11209800 tctcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtttgtcatttaggt 11209899  T
319 caccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagag 418  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
11209900 cgccaattactttgaatggccacaacttcacatcactttctactatggggtcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagag 11209999  T
419 agttgtgtacact 431  Q
    |||||||||||||    
11210000 agttgtgtacact 11210012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 414
Target Start/End: Original strand, 11196932 - 11197326
Alignment:
20 tctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagca 119  Q
    |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||    
11196932 tctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataaca 11197031  T
120 cccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatct 219  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11197032 cccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatct 11197131  T
220 cggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtc 319  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
11197132 cggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtc 11197231  T
320 accaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaa 414  Q
     |||||||||||||| |||||| |||||| |||||||||||| || |  |||||||| |||| ||||||||||||||||||||||||||||||||    
11197232 gccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttgcatctacaaaacaaa 11197326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 11276162 - 11276562
Alignment:
19 ttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagc 118  Q
    ||||||||||||||||||||||||||  || || ||||||||||||||||||||||||||||||||| | |||||||||||| || ||||||||||||||    
11276162 ttctacatccatgattaaatggtttcgtgttaaagccatatgcaattgcagctgcagtaggctcatttattattcgcataacgtttaggccagcaatagc 11276261  T
119 acccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatc 218  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | ||||| ||||||    
11276262 acccgcatctcgagtagactggcgctgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttaatccaaggaaggcttctgctatc 11276361  T
219 tcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggt 318  Q
    |||  |||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
11276362 tcgcgcattttcgccaataccatggatgagatttcttcagcagtaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggt 11276461  T
319 caccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagag 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
11276462 caccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagag 11276561  T
419 a 419  Q
    |    
11276562 a 11276562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 22 - 434
Target Start/End: Original strand, 11156481 - 11156895
Alignment:
22 tacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacc 121  Q
    |||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||    
11156481 tacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacc 11156580  T
122 cgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcg 221  Q
    ||||||| | || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
11156581 cgcatcttgggtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaaacttcagctatctcg 11156680  T
222 gccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcac 321  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||  |    
11156681 gccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtttgtcattgaggttgc 11156780  T
322 caattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaa--aagaga 419  Q
    ||||||||||||| |||||| |||||| |||||||||||| || |  |||||||| |||| |||||||||||||||||||||||||||||||  || |||    
11156781 caattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttgcatctacaaaacaaacaaaaga 11156880  T
420 gttgtgtacactatg 434  Q
    |||| ||||||||||    
11156881 gttgagtacactatg 11156895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 414
Target Start/End: Complemental strand, 11241405 - 11241005
Alignment:
20 tctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagca 119  Q
    |||||||||||||||||  | ||||| || ||||||||||||||||||| |||||||||||||| ||| ||||| || ||| ||||||||||||||||||    
11241405 tctacatccatgattaagagttttcatgttaaggccatatgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagca 11241306  T
120 cccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatct 219  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11241305 cccgcatctcgaatagactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatct 11241206  T
220 cggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtc 319  Q
     ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | ||||  ||||||||||||||||    
11241205 tggccatttttgccaataccatcgatgagatttcttcagcagcgaaatgcttttcctcgtcattatagttaacaatagtcatgtgtttgtcattcaggtc 11241106  T
320 accaattactttgaatggccacaacttcacatcactttgtactatgggatcgca------aaatttccgaccaattagcctctttgcatctacaaaacaa 413  Q
     |||||||||||||| ||||||||||||| |||||||||||  ||||| || ||      ||| |||| |||||||||||||||||||||||||||||||    
11241105 gccaattactttgaagggccacaacttcatatcactttgtatgatggggtcacaaaacttaaacttcctaccaattagcctctttgcatctacaaaacaa 11241006  T
414 a 414  Q
    |    
11241005 a 11241005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 11200096 - 11200394
Alignment:
19 ttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagc 118  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||    
11200096 ttctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagc 11200195  T
119 acccgcatctcgagtagactggcgt----tgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagc 214  Q
    ||||||||||| |||||||||||||    ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
11200196 acccgcatctcaagtagactggcgtacgttgtgaatcattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttcagc 11200295  T
215 tatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcatt 313  Q
     |||||| ||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
11200296 aatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcatt 11200394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 22 - 313
Target Start/End: Original strand, 11161348 - 11161651
Alignment:
22 tacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggct--------cattgagtattcgcataacattgaggccagca 113  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||||        |||||| || |||||||||||| |||||| ||    
11161348 tacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcatctgcagtaggctagtagagtcattgattactcgcataacattaaggccaaca 11161447  T
114 atagcacccgcatctcgagtagactggcgt----tgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagct 209  Q
    ||||||||||||||||||||||||||||||    |||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
11161448 atagcacccgcatctcgagtagactggcgtacgttgtgaaacattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagct 11161547  T
210 tcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgt 309  Q
    ||||| |||||| ||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
11161548 tcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgt 11161647  T
310 catt 313  Q
    ||||    
11161648 catt 11161651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 28 - 410
Target Start/End: Original strand, 11133211 - 11133593
Alignment:
28 catgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 127  Q
    |||||||||| ||||||  |||||| |||||||||||||||||||| |||||||| |||| |||||||||||| ||||| || |||||| |||| |||||    
11133211 catgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatc 11133310  T
128 tcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatt 227  Q
    || |||||  |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||| || |||||    |||    
11133311 tctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatctcacgaatt 11133410  T
228 tttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaatta 327  Q
    |||| ||||||||| ||||||||||| |||||||||||||| ||||||||  |||| || || ||||||||  | ||||||||||| | | |||||||||    
11133411 tttgtcaataccattgatgatatttcctcagcagcaaaatgtttttcctctccattgtaattgacaacaatattgggtttgtcatttatgccaccaatta 11133510  T
328 ctttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaa 410  Q
    |||| ||||||||||| |||| |||||| || ||||| || || | |||||  | |||||| |||||||| ||||||||||||    
11133511 ctttaaatggccacaatttcatatcactctgaactatagggtcactaaattctctaccaatgagcctcttcgcatctacaaaa 11133593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 551 - 621
Target Start/End: Original strand, 11171312 - 11171382
Alignment:
551 ttaaccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagctcctatg 621  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
11171312 ttaaccccgtaagtaatacaatcttgggattttggtcccttataaaaaacaataacaaatcagctcctatg 11171382  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 8382104 - 8382149
Alignment:
568 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcag 613  Q
    |||||||||  |||||| |||||| |||||||||||||||||||||    
8382104 acaatcttgcaattttgatcccttataaaaaacaataacaaatcag 8382149  T

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Target: scaffold1207 (Bit Score: 250; Significance: 1e-138; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 47 - 480
Target Start/End: Original strand, 1121 - 1538
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgt 146  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| |||||||||    
1121 gtcaaagccatatgcaattgcagctgcagtaggctcattgagtattcccaaaacattgaggccagcaatagcacctgcatctcgagtagattggcgttgt 1220  T
147 gagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatg 246  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||| |||||  |||||| ||||||||||| ||||    
1221 gagtcattaaagtatgcaggcacagttataacaacatcctccactgttgatccaaggaaggcttctgctgtctcgcgcattttcgccaataccatggatg 1320  T
247 atatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaactt 346  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |                   | ||||||||||||||||    
1321 agatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttat------------------gtatgaatggccacaactt 1402  T
347 cacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatg--nnnnnnnntt 444  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
1403 cacatcactttctactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgaaaaaaacaatt 1502  T
445 ggatcgctttatgaattaatcattctatgtggattt 480  Q
    | ||||||||||| |||||||||| |||||||||||    
1503 gtatcgctttatgtattaatcattttatgtggattt 1538  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 8382805 - 8382727
Alignment:
50 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 128  Q
    ||||||||||||||  ||||| ||||| |||||||||| ||| ||||| ||||||||||||||||| ||||| ||||||    
8382805 aaggccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct 8382727  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 8602213 - 8602291
Alignment:
50 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 128  Q
    ||||||||||||||  ||||||||||| |||||||||| ||| ||||| |||||||| |||||||| ||||| ||||||    
8602213 aaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct 8602291  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 13333388 - 13333307
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 128  Q
    |||||||||||||||||| || || |||||||| ||||||| |||||| || | ||| ||||||||||||||||| ||||||    
13333388 gtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct 13333307  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 10494306 - 10494226
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 127  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||||||| |||||    
10494306 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc 10494226  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 8585638 - 8585558
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 127  Q
    |||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| |||||    
8585638 gtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatc 8585558  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 614
Target Start/End: Original strand, 2407345 - 2407404
Alignment:
555 ccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 614  Q
    |||| ||||||  ||||||||| |||||||||||| | ||||||||||||||||||||||    
2407345 ccccctaagtatcacaatcttgcgattttggtcccctataaaaaacaataacaaatcagc 2407404  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 8628768 - 8628847
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcat 126  Q
    |||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| ||||    
8628768 gtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcat 8628847  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 568 - 614
Target Start/End: Original strand, 7875716 - 7875762
Alignment:
568 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 614  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||    
7875716 acaatcttgcgattttggtcccctataaaaaacaataacaaatcagc 7875762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 27830807 - 27830733
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacc 121  Q
    |||||||||||||||||| || || |||||||||||  | | ||| ||||||||||| ||||||||||| |||||    
27830807 gtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaatggcacc 27830733  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 29577594 - 29577532
Alignment:
54 ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaata 116  Q
    |||||||||| |||||| ||||| || ||||||| ||| ||||| ||||||||||||||||||    
29577594 ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaata 29577532  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 8654686 - 8654767
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 128  Q
    |||||||||||||||||| || || |||||||| ||||||||||| || || || || || |||||||| ||||| ||||||    
8654686 gtcaaggccatatgcaatagctgcggcagtaggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatct 8654767  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 8667655 - 8667736
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 128  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| ||||||    
8667655 gtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatct 8667736  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 6789749 - 6789829
Alignment:
48 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 128  Q
    ||||||||||||||||  ||||| || || || ||||||| |||||| |||||||| || |||||||| ||||| ||||||    
6789749 tcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatct 6789829  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 8671562 - 8671482
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 127  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| |||||    
8671562 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatc 8671482  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 554 - 614
Target Start/End: Original strand, 40352657 - 40352717
Alignment:
554 accccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 614  Q
    ||||| ||||||  ||||||||| |||||||||| | | ||||||||||||||||||||||    
40352657 accccctaagtatcacaatcttgcgattttggtcgcctataaaaaacaataacaaatcagc 40352717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 3147515 - 3147589
Alignment:
54 ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 128  Q
    ||||| ||||| || || |||||||| ||||||| ||| ||||||| ||| |||||||||||| |||| ||||||    
3147515 ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatct 3147589  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 7877662 - 7877584
Alignment:
50 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 128  Q
    ||||||||||||||  ||||| ||||| || ||||| | ||| ||||||||||||||||| ||||  ||||| ||||||    
7877662 aaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatct 7877584  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 8538275 - 8538353
Alignment:
50 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 128  Q
    |||||| |||||||  ||||| || ||||| ||||||| ||| ||||| |||||||||||||||||  |||| ||||||    
8538275 aaggccgtatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatct 8538353  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 610
Target Start/End: Original strand, 41415672 - 41415714
Alignment:
568 acaatcttgggattttggtcccttgtaaaaaacaataacaaat 610  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||    
41415672 acaatcttgcgattttggccccttataaaaaacaataacaaat 41415714  T

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Target: scaffold0734 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 560 - 614
Target Start/End: Original strand, 1908 - 1962
Alignment:
560 taagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 614  Q
    ||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||    
1908 taagtaacacaatcttgagattttggtcccctataaaaaacaataacaaatcagc 1962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 6714 - 6770
Alignment:
377 tttccgaccaattagcctctttgcatctacaaaacaaa-ag-agagttgtgtacact 431  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||    
6714 tttccaaccaattagcctctttgcatctacaaaacaaacagaagagttgtgtacact 6770  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 9335822 - 9335742
Alignment:
48 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 128  Q
    ||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||| ||| ||||||    
9335822 tcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatct 9335742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 30775489 - 30775568
Alignment:
48 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 127  Q
    ||||| ||||||||||| || |||||||| |||||||| | ||||| ||||||||| || |||||||| ||||| |||||    
30775489 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc 30775568  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 35132684 - 35132765
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 128  Q
    |||||||||||||||||  || || |||||||| ||||| | || || |||||||||| | |||||||||||||| ||||||    
35132684 gtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatct 35132765  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 7542462 - 7542543
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 128  Q
    |||||||||||||||||  || || |||||||| ||||| | |   | ||||||||||||||||||||| ||||||||||||    
7542462 gtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatct 7542543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 16661924 - 16661844
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 127  Q
    |||||||||||||||||| || |||||||| || ||||||| ||| | || ||| || ||||||||||| ||||| |||||    
16661924 gtcaaggccatatgcaatagctgctgcagtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatc 16661844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 16657449 - 16657368
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 128  Q
    |||||| ||||||||||| || || |||||||| |||||||  ||||| || ||||| |||||||| || ||||| ||||||    
16657449 gtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatct 16657368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 14703644 - 14703724
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 127  Q
    |||||||||||||||||| || || || ||||| ||||| | ||  | ||||||||||||||| |||||| |||| |||||    
14703644 gtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatc 14703724  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 612
Target Start/End: Original strand, 5003527 - 5003571
Alignment:
568 acaatcttgggattttggtcccttgtaaaaaacaataacaaatca 612  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||    
5003527 acaatcttgcgattttgatcccttataaaaaacaataacaaatca 5003571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 34466725 - 34466645
Alignment:
47 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 127  Q
    |||||| ||||||||||| || || ||||| || ||||||| |||| ||| |||||| ||||||||||||| ||| |||||    
34466725 gtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatc 34466645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 614
Target Start/End: Original strand, 33096059 - 33096104
Alignment:
569 caatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 614  Q
    ||||||||  ||||||||||||| ||||||| ||||||||||||||    
33096059 caatcttgcaattttggtcccttataaaaaataataacaaatcagc 33096104  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 15595516 - 15595571
Alignment:
288 ttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaactt 346  Q
    ||||||| |||||| |||||||||||||   ||||||| || |||||||||||||||||    
15595516 ttaacaataatcatgggtttgtcattca---caccaatgaccttgaatggccacaactt 15595571  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 614
Target Start/End: Original strand, 18896459 - 18896505
Alignment:
568 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 614  Q
    ||||||||| |||||||||||| | ||||||||||||| ||||||||    
18896459 acaatcttgcgattttggtcccctataaaaaacaataataaatcagc 18896505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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