View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9360_low_30 (Length: 277)
Name: NF9360_low_30
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 41341905 - 41341653
Alignment:
| Q |
19 |
gcaagtaccttttccaaggtatatttaacaacaaatcataatcattttcatcttggtttatacgtgtatgtggtagtttataatcttaatcttactttcg |
118 |
Q |
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| T |
41341905 |
gcaagtaccttttccaaggtatatttaacaacaaatcataatcattttcatcttggtttatacgtgtatgtggtagtttataatcttaatcttactttcg |
41341806 |
T |
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| Q |
119 |
ctgtttctgaattgtt-aatgcagagggtgtatgctacgctaagaaggatttcaatttggcaaagcatccagaaatcgatgttccaaatttgcaggtgat |
217 |
Q |
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| T |
41341805 |
ctgtttctgaattgttgaatgcagagggtgtatgctacgctaagaaggatttcaatttggcaaagcatccagaaatcgatgttccaaatttgcaggtgat |
41341706 |
T |
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| Q |
218 |
taagcttatgcagagcttcaaatcaagggaatatgttagagaaacctttgctt |
270 |
Q |
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| T |
41341705 |
taagcttatgcagagcttcaaatcaagggaatatgttagagaaacctttgctt |
41341653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 139 - 270
Target Start/End: Original strand, 2601991 - 2602122
Alignment:
| Q |
139 |
cagagggtgtatgctacgctaagaaggatttcaatttggcaaagcatccagaaatcgatgttccaaatttgcaggtgattaagcttatgcagagcttcaa |
238 |
Q |
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| T |
2601991 |
cagagggagtttgctatgcaaagaaggatttcaatttggctaagcacccagaaattgatgtgccaaatctgcaagtgattaagctgatgcagagcttcaa |
2602090 |
T |
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| Q |
239 |
atcaagggaatatgttagagaaacctttgctt |
270 |
Q |
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| T |
2602091 |
atctagggaatatgtgagggaaacttttgctt |
2602122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 22605199 - 22605281
Alignment:
| Q |
159 |
aagaaggatttcaatttggcaaagcatccagaaatcgatgttccaaatttgcaggtgattaagcttatgcagagcttcaaatc |
241 |
Q |
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|||||||||||||||||||| || || ||||| || ||||| |||||| |||| ||||||||||| ||||| || |||||||| |
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| T |
22605199 |
aagaaggatttcaatttggctaatcacccagagattgatgtgccaaatctgcaagtgattaagctgatgcaaagtttcaaatc |
22605281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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