View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9360_low_34 (Length: 259)

Name: NF9360_low_34
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9360_low_34
NF9360_low_34
[»] scaffold1643 (1 HSPs)
scaffold1643 (1-245)||(110-354)
[»] chr3 (35 HSPs)
chr3 (1-245)||(6945208-6945452)
chr3 (1-245)||(7585811-7586055)
chr3 (3-245)||(6781805-6782047)
chr3 (1-245)||(6733614-6733858)
chr3 (1-245)||(6523331-6523575)
chr3 (3-245)||(6941878-6942120)
chr3 (1-243)||(6841418-6841660)
chr3 (48-245)||(6556563-6556760)
chr3 (56-203)||(6530409-6530556)
chr3 (47-245)||(6450640-6450838)
chr3 (47-165)||(6730648-6730766)
chr3 (3-245)||(8587865-8588107)
chr3 (6-238)||(6481838-6482070)
chr3 (44-173)||(8570869-8570998)
chr3 (3-211)||(6782211-6782419)
chr3 (3-242)||(8469502-8469741)
chr3 (44-212)||(5266062-5266230)
chr3 (3-94)||(5296684-5296775)
chr3 (3-100)||(4390906-4391003)
chr3 (44-83)||(6880496-6880535)
chr3 (44-83)||(6898068-6898107)
chr3 (3-83)||(6593363-6593443)
chr3 (3-83)||(7747941-7748021)
chr3 (45-100)||(5248158-5248213)
chr3 (44-83)||(6724089-6724128)
chr3 (199-245)||(6528862-6528908)
chr3 (45-79)||(6915082-6915116)
chr3 (44-80)||(5261918-5261954)
chr3 (51-83)||(6236034-6236066)
chr3 (153-229)||(6243406-6243482)
chr3 (44-77)||(6243297-6243330)
chr3 (44-77)||(6257182-6257215)
chr3 (153-226)||(6257291-6257364)
chr3 (44-77)||(6263662-6263695)
chr3 (66-110)||(8452640-8452684)
[»] scaffold0425 (2 HSPs)
scaffold0425 (1-243)||(9613-9855)
scaffold0425 (44-79)||(13548-13583)
[»] scaffold2053 (1 HSPs)
scaffold2053 (48-245)||(104-301)
[»] scaffold0958 (1 HSPs)
scaffold0958 (44-139)||(1746-1841)
[»] chr7 (1 HSPs)
chr7 (48-172)||(6575244-6575368)


Alignment Details
Target: scaffold1643 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 110 - 354
Alignment:
Q  1 acgactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggca 100  Q
    |||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  110 acgactccacgttttcaaactcatcactaacttcaaattgatacagagaattgagttggaacaaactccactcctctctcgaaccaatcagtcttgggca 209  T
Q  101 attggatattacaaggatccacaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagaaacagagtaat-aagattggt 199  Q
    |||| ||||| |||||  || |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||| ||| |||||    
T  210 attgtatattccaaggtccctcaagttggaaggcaaaccacccattggaaacgattccagctctggacaatcgtccagatacaga-taatgaagtttggt 308  T
Q  200 gaacaagtgtagttccaaagacaaggaggagaagcgccatcctttt 245  Q
    |||||||||||||||||||| |||||||||| || |||||||||||    
T  309 gaacaagtgtagttccaaaggcaaggaggaggagtgccatcctttt 354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 6945208 - 6945452
Alignment:
Q  1 acgactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggca 100  Q
    |||||||||||||||||||||||||||||||||| |||| |   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6945208 acgactccacgttttcaaactcatcactaacaacgaattcaatgagagaattgagttggaacaaaccccactcctctcttgaaccaatcagttttgggca 6945307  T
Q  101 attggatattacaaggatccacaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagaaacagagtaat-aagattggt 199  Q
    |||| ||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| |||||    
T  6945308 attgtatattacaagttccctcaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagatacaga-taatgaagtttggt 6945406  T
Q  200 gaacaagtgtagttccaaagacaaggaggagaagcgccatcctttt 245  Q
    |||||||||||||   |||| |||||||||| |  |||||||||||    
T  6945407 gaacaagtgtagtgaaaaaggcaaggaggaggaatgccatcctttt 6945452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 7585811 - 7586055
Alignment:
Q  1 acgactccacgttttcaaactcatcactaacaac-aaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggc 99  Q
    |||||||||||||||||||||||||||||||| | |||  | | ||||||||||||||||||||||||||||| ||||||| || |||||||||||||||    
T  7585811 acgactccacgttttcaaactcatcactaacaccgaaagctct-cagagaattgagttggaacaaaccccactgctctctcaaagcaatcagttttgggc 7585909  T
Q  100 aattggatattacaaggatccacaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagaaacagagtaataagattggt 199  Q
    ||||| ||||| ||||  | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| | ||||| ||||    
T  7585910 aattgtatattccaagactgcacaagttggaaggcaaaccacccattggaaacgattccagctctggacaatcgtacagacgcagagcactaagactggt 7586009  T
Q  200 gaacaagtgtagttccaaagacaaggaggagaagcgccatcctttt 245  Q
    |||||||||||||||||||| |||||||||| || |||||||||||    
T  7586010 gaacaagtgtagttccaaaggcaaggaggaggagtgccatcctttt 7586055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 6782047 - 6781805
Alignment:
Q  3 gactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 102  Q
    |||||||| |||||||||||||||||||||   ||||   |||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6782047 gactccacattttcaaactcatcactaacagagaattctaacaaggaactgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 6781948  T
Q  103 tggatattacaaggatccacaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagaaacagagtaat-aagattggtga 201  Q
    || |||||  |||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||| |||||||    
T  6781947 tgtatattttaaggctcctcaagttggaaggcaaaccacccattggaaacgattccagctctggacaatcgtacagatacaga-taatgaagtttggtga 6781849  T
Q  202 acaagtgtagttccaaagacaaggaggagaagcgccatcctttt 245  Q
    |||||||||||||||||| |||||||||| || |||||||||||    
T  6781848 acaagtgtagttccaaaggcaaggaggaggagtgccatcctttt 6781805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 6733614 - 6733858
Alignment:
Q  1 acgactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggca 100  Q
    |||||||||||||||||||||||||||| ||||  |||  |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6733614 acgactccacgttttcaaactcatcactgacaaagaatgaatacaaggaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggca 6733713  T
Q  101 attggatattacaaggatccacaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagaaacagagtaat-aagattggt 199  Q
    ||||  |||| ||||||  | |||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| | ||||| |||| ||| |||||    
T  6733714 attgtgtattccaaggaggctcaagttggaaggcaaaccacccattggaaacgattccagctctggacaatcaaacaaacacaga-taatgaagtttggt 6733812  T
Q  200 gaacaagtgtagttccaaagacaaggaggagaagcgccatcctttt 245  Q
    |||||||||||||||||||| |||||||||| || |||||||||||    
T  6733813 gaacaagtgtagttccaaaggcaaggaggaggagtgccatcctttt 6733858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 6523575 - 6523331
Alignment:
Q  1 acgactccacgttttcaaactcatcactaacaac-aaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggc 99  Q
    |||||||||||||||||||||||||||||||||  |||| | |  || ||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  6523575 acgactccacgttttcaaactcatcactaacaaagaaatatctcaag-gaattgagttggaacaacccccactcctctctcgaaccaatcagtcttgggc 6523477  T
Q  100 aattggatattacaaggatccacaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagaaacagagtaataagattggt 199  Q
    ||||| ||||| |||||  || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| |  |||| ||||    
T  6523476 aattgtatattccaaggtccctcaagttggaaggcaaaccacccattggaaacgattccagctctggacaatcgtacagacgcagagaacgaagactggt 6523377  T
Q  200 gaacaagtgtagttccaaagacaaggaggagaagcgccatcctttt 245  Q
    |||||||||||||||||||| |||||||||| ||| ||| ||||||    
T  6523376 gaacaagtgtagttccaaaggcaaggaggaggagcaccagcctttt 6523331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 6941878 - 6942120
Alignment:
Q  3 gactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 102  Q
    |||||||| |||||||||||||||||||||   ||||   |||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6941878 gactccacattttcaaactcatcactaacagagaattctaacaaggaactgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 6941977  T
Q  103 tggatattacaaggatccacaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagaaacagagtaat-aagattggtga 201  Q
    || |||||  |||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||| |||||||    
T  6941978 tgtatattttaaggttcctcaagttggaaggcaaaccacccattggaaacgattccagctctggacaatcgtacagatacaga-taatgaagtttggtga 6942076  T
Q  202 acaagtgtagttccaaagacaaggaggagaagcgccatcctttt 245  Q
    |||||||||||   |||| |||||||||| || |||||||||||    
T  6942077 acaagtgtagtgaaaaaggcaaggaggaggagtgccatcctttt 6942120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 6841660 - 6841418
Alignment:
Q  1 acgactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggca 100  Q
    ||||||||||||||||||||||||||||||||   ||    | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6841660 acgactccacgttttcaaactcatcactaacactgaaccatttcaaggaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggca 6841561  T
Q  101 attggatattacaaggatccacaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagaaacagagtaataagattggtg 200  Q
    |||   ||||   |||  || |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||| |  |||| |||||    
T  6841560 attatgtattctgaggtccctcaagttggaaggcaaaccacccattggaaacgattccagctctggacaatcgtccagatacagagaacgaagactggtg 6841461  T
Q  201 aacaagtgtagttccaaagacaaggaggagaagcgccatcctt 243  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||    
T  6841460 aacaagtgtagttccaaaggcaaggaggaggagccccatcctt 6841418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 6556760 - 6556563
Alignment:
Q  48 gaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaattggatattacaaggatccacaagttggaaggcaaaccacccattg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||      ||||||||||||||||||||||||||    
T  6556760 gaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaattgtatattccaagttgtatcaagttggaaggcaaaccacccattg 6556661  T
Q  148 gaaaggattccagctctggacaatcgtacagaaacagagtaataagattggtgaacaagtgtagttccaaagacaaggaggagaagcgccatcctttt 245  Q
    ||| |||||||||||||||||||||||||||| ||||||    ||| ||||||||||||||||||||||||| |||||||||| ||| ||| ||||||    
T  6556660 gaagggattccagctctggacaatcgtacagatacagagattgaagtttggtgaacaagtgtagttccaaaggcaaggaggaggagcaccagcctttt 6556563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 6530556 - 6530409
Alignment:
Q  56 ttggaacaaaccccactcctctctcgaaccaatcagttttgggcaattggatattacaaggatccacaagttggaaggcaaaccacccattggaaaggat 155  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||  |||||  ||||   | |||||||| |||||||||||||||||||||||||    
T  6530556 ttggaacagaccccactcctctctcgaaccaatcagttttgggcaattacatattgaaaggtcactcaagttgggaggcaaaccacccattggaaaggat 6530457  T
Q  156 tccagctctggacaatcgtacagaaacagagtaataagattggtgaac 203  Q
    |||||||||||||||||||||| | ||||||||  |||| ||||||||    
T  6530456 tccagctctggacaatcgtacaaatacagagtatcaagactggtgaac 6530409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 6450838 - 6450640
Alignment:
Q  47 agaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaattggatattacaaggatccacaagttggaaggcaaaccacccatt 146  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||| ||| ||||| |||||||||||||||| ||    
T  6450838 agaattgagttggaacaaaccccactcctctctcgaagcaatcagttttgggcaattccatattacaaggttcctcaagtgggaaggcaaaccacccctt 6450739  T
Q  147 ggaaaggattccagctctggacaatcgtacagaaacagagtaataagattggtgaacaagtgtagttccaaagacaaggaggagaagcgccatcctttt 245  Q
    ||||| ||||| |||||||  |||||  ||| | ||| ||    |||||| ||||||||||||||| | || |  ||||||||| ||||||| ||||||    
T  6450738 ggaaacgattctagctctgtgcaatcagacaaatacaaagagtgaagatttgtgaacaagtgtagtgcaaagggaaaggaggaggagcgccagcctttt 6450640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 6730766 - 6730648
Alignment:
Q  47 agaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaattggatattacaaggatccacaagttggaaggcaaaccacccatt 146  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||| ||| ||||| |||||||||||||||| ||    
T  6730766 agaattgagttggaacaaaccccactcctctctcgaagcaatcagttttgggcaattccatattacaaggttcctcaagtgggaaggcaaaccacccctt 6730667  T
Q  147 ggaaaggattccagctctg 165  Q
    ||||| ||||| |||||||    
T  6730666 ggaaacgattctagctctg 6730648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 8587865 - 8588107
Alignment:
Q  3 gactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 102  Q
    |||||||||||||||||||||||||||||    ||    |  |||||||||||||||||||||||||| | |||||||||| |||||||||| || ||||    
T  8587865 gactccacgttttcaaactcatcactaactttgaaagattttagagaattgagttggaacaaaccccattgctctctcgaagcaatcagtttaggacaat 8587964  T
Q  103 tggatattacaaggatccacaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagaaacagagtaat-aagattggtga 201  Q
     | |||||||||||     |||||  ||||| ||||| ||| | ||||| ||||||| |||||||||| || ||| |   ||| |||| |||||||||||    
T  8587965 cgaatattacaaggtcggtcaagtgtgaaggaaaacctcccctaggaaacgattccaactctggacaaccgcacaaacgaaga-taatcaagattggtga 8588063  T
Q  202 acaagtgtagttccaaagacaaggaggagaagcgccatcctttt 245  Q
    |||||||||||||||||| ||||||| || ||||||||||||||    
T  8588064 acaagtgtagttccaaaggcaaggagtaggagcgccatcctttt 8588107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 6482070 - 6481838
Alignment:
Q  6 tccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaattgg 105  Q
    ||||||||||||||||||||||||||   ||| |  | |||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |     
T  6482070 tccacgttttcaaactcatcactaactctaaactctttcagagaattgagttggaacaaaccccactcttctcttgaagcaatcagttttgggcaatcga 6481971  T
Q  106 atattacaaggatccacaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagaaacagagtaataagattggtgaacaa 205  Q
    ||||   || |   | ||||||||||||||||||||||  |||||| ||  ||| ||| ||||||| |||||   | |||| |   ||||||||||||||    
T  6481970 atatcgaaaagcagctcaagttggaaggcaaaccaccctctggaaatgaaaccaactccggacaattgtacaagtatagagaatggagattggtgaacaa 6481871  T
Q  206 gtgtagttccaaagacaaggaggagaagcgcca 238  Q
    || ||||   || |||||||||||| |||||||    
T  6481870 gtatagtgaaaaggacaaggaggaggagcgcca 6481838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 8570998 - 8570869
Alignment:
Q  44 cagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaattggatattacaaggatccacaagttggaaggcaaaccaccc 143  Q
    |||||| || ||||||||||||||||| |||||||| |||||||| | ||||||||||||   |||||||||  | | |||||||||||||||||| |||    
T  8570998 cagagagttaagttggaacaaaccccaatcctctcttgaaccaattaattttgggcaattttgtattacaagtttgctcaagttggaaggcaaacctccc 8570899  T
Q  144 attggaaaggattccagctctggacaatcg 173  Q
     ||||||| |||||||||| ||||||||||    
T  8570898 cttggaaatgattccagctgtggacaatcg 8570869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 6782419 - 6782211
Alignment:
Q  3 gactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 102  Q
    |||||||||||||||||||||||| ||||||  ||    | ||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6782419 gactccacgttttcaaactcatcagtaacaaagaaagatttcaaggaattgagttggaacaaaccccactcctctcttgaaccaatcagttttgggcaat 6782320  T
Q  103 tggatattacaaggatccacaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagaaacagagtaataagattggtgaa 202  Q
    |  ||||| ||| |   | |||||||| ||||||||| |||   ||||| || |||| ||| |||||||||  |||| ||| |  |  ||| ||||||||    
T  6782319 tatatattccaaaggagctcaagttgggaggcaaacctccctcaggaaatgaatccaactccggacaatcgaccagatacaaaaaatcaagtttggtgaa 6782220  T
Q  203 caagtgtag 211  Q
    |||||||||    
T  6782219 caagtgtag 6782211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 8469502 - 8469741
Alignment:
Q  3 gactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaat 102  Q
    ||||| ||||||||||||||||| |||||||  |||   | ||  |||||||||  ||||||||||||||||| |||| || |||||| || ||||||||    
T  8469502 gactctacgttttcaaactcatcgctaacaaagaatgatttcaaggaattgagtctgaacaaaccccactcctgtctcaaagcaatcaattctgggcaat 8469601  T
Q  103 tggatattacaaggatccacaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagaaacagagtaataagattggtgaa 202  Q
    |  |||||||||||   | |||||||||||||||||||||  | ||||| || ||||||   ||||||| |||||     | || |   |||||||||||    
T  8469602 tccatattacaaggcctctcaagttggaaggcaaaccaccattaggaaatgaatccagcctcggacaattgtacaactttaaagaatggagattggtgaa 8469701  T
Q  203 caagtgtagttccaaagacaaggaggagaagcgccatcct 242  Q
     | |||||||||||||| |||||||||| || ||||||||    
T  8469702 gaggtgtagttccaaaggcaaggaggaggagtgccatcct 8469741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 212
Target Start/End: Original strand, 5266062 - 5266230
Alignment:
Q  44 cagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaattggatattacaaggatccacaagttggaaggcaaaccaccc 143  Q
    ||||||||| ||||||||||||||||||||| |||||||| |||| ||||||||||| |||| ||||  |||| |   || |  ||||||||| || |||    
T  5266062 cagagaatttagttggaacaaaccccactcccctctcgaagcaattagttttgggcacttggttattctaaggctggtcagggaggaaggcaaccctccc 5266161  T
Q  144 attggaaaggattccagctctggacaatcgtacagaaacagagtaataagattggtgaacaagtgtagt 212  Q
     | ||||| || ||||| | ||||||||| |||| |   | |||  |||||||||||||||||||||||    
T  5266162 ctaggaaatgactccagttgtggacaatcatacaaatttaaagttttaagattggtgaacaagtgtagt 5266230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 5296684 - 5296775
Alignment:
Q  3 gactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttt 94  Q
    ||||||| ||||||||| ||||| |||||||  ||||  | ||||||||||||||||||||| ||||||| |||||||||| | ||||||||    
T  5296684 gactccatgttttcaaagtcatcgctaacaatgaattctttcagagaattgagttggaacaacccccacttctctctcgaagctatcagttt 5296775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 4391003 - 4390906
Alignment:
Q  3 gactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggca 100  Q
    |||||||| |||||||| ||||||| |||||  || |  |  |||||||||||||||||||||||||||||| ||||| || |||| |||||||||||    
T  4391003 gactccacattttcaaagtcatcaccaacaatgaaatcttttagagaattgagttggaacaaaccccactcccctctcaaagcaattagttttgggca 4390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 6880496 - 6880535
Alignment:
Q  44 cagagaattgagttggaacaaaccccactcctctctcgaa 83  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6880496 cagagaattgagttggaacaaaccccactcctctctcgaa 6880535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 6898068 - 6898107
Alignment:
Q  44 cagagaattgagttggaacaaaccccactcctctctcgaa 83  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6898068 cagagaattgagttggaacaaaccccactcctctctcgaa 6898107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 6593443 - 6593363
Alignment:
Q  3 gactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaa 83  Q
    ||||||| | ||| ||| ||||||||||||   ||||  | |||||||| |||||||||||||||||||||||||||||||    
T  6593443 gactccaagatttgaaaatcatcactaacactgaattgtttcagagaatcgagttggaacaaaccccactcctctctcgaa 6593363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 7747941 - 7748021
Alignment:
Q  3 gactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaa 83  Q
    ||||||| | ||||||| ||||||||||||   ||||  |  ||||| |||||||||||||||||||||||||||||||||    
T  7747941 gactccaagatttcaaaatcatcactaacacataattgttttagagatttgagttggaacaaaccccactcctctctcgaa 7748021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 5248158 - 5248213
Alignment:
Q  45 agagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggca 100  Q
    |||||||| |||||||| |||||||||||| |||||||| |||| |||||||||||    
T  5248158 agagaattaagttggaataaaccccactcccctctcgaagcaattagttttgggca 5248213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 6724128 - 6724089
Alignment:
Q  44 cagagaattgagttggaacaaaccccactcctctctcgaa 83  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  6724128 cagagaatcgagttggaacaaaccccactcctctctcgaa 6724089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 6528908 - 6528862
Alignment:
Q  199 tgaacaagtgtagttccaaagacaaggaggagaagcgccatcctttt 245  Q
    ||||||||||||||||||||| |||||||||| || |||||||||||    
T  6528908 tgaacaagtgtagttccaaaggcaaggaggaggagtgccatcctttt 6528862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 6915082 - 6915116
Alignment:
Q  45 agagaattgagttggaacaaaccccactcctctct 79  Q
    |||||||||||||||||||||||||||||||||||    
T  6915082 agagaattgagttggaacaaaccccactcctctct 6915116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 5261918 - 5261954
Alignment:
Q  44 cagagaattgagttggaacaaaccccactcctctctc 80  Q
    |||||||||||||| ||||||||||||||||||||||    
T  5261918 cagagaattgagttcgaacaaaccccactcctctctc 5261954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 6236034 - 6236066
Alignment:
Q  51 ttgagttggaacaaaccccactcctctctcgaa 83  Q
    |||||||||||||||||||||||||||||||||    
T  6236034 ttgagttggaacaaaccccactcctctctcgaa 6236066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 6243406 - 6243482
Alignment:
Q  153 gattccagctctggacaatcgtacagaaacagagtaataagattggtgaacaagtgtagttccaaagacaaggagga 229  Q
    |||||||||  ||||||||||||||  |  |||| | ||||||||||||||||||||||| | |||| |||||||||    
T  6243406 gattccagcaatggacaatcgtacaacacgagagaattaagattggtgaacaagtgtagtgcaaaaggcaaggagga 6243482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 6243297 - 6243330
Alignment:
Q  44 cagagaattgagttggaacaaaccccactcctct 77  Q
    |||||| |||||||||||||||||||||||||||    
T  6243297 cagagatttgagttggaacaaaccccactcctct 6243330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 6257182 - 6257215
Alignment:
Q  44 cagagaattgagttggaacaaaccccactcctct 77  Q
    |||||| |||||||||||||||||||||||||||    
T  6257182 cagagatttgagttggaacaaaccccactcctct 6257215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 6257291 - 6257364
Alignment:
Q  153 gattccagctctggacaatcgtacagaaacagagtaataagattggtgaacaagtgtagttccaaagacaagga 226  Q
    |||||||||  ||||||||||||||  |  |||| | ||||||||||||||||||||||| | |||| ||||||    
T  6257291 gattccagccatggacaatcgtacaacacgagagaattaagattggtgaacaagtgtagtgcaaaaggcaagga 6257364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 6263662 - 6263695
Alignment:
Q  44 cagagaattgagttggaacaaaccccactcctct 77  Q
    |||||| |||||||||||||||||||||||||||    
T  6263662 cagagatttgagttggaacaaaccccactcctct 6263695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 8452640 - 8452684
Alignment:
Q  66 ccccactcctctctcgaaccaatcagttttgggcaattggatatt 110  Q
    |||||||||| ||| ||| ||||||||||||||||||||| ||||    
T  8452640 ccccactcctgtcttgaagcaatcagttttgggcaattggttatt 8452684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 9855 - 9613
Alignment:
Q  1 acgactccacgttttcaaactcatcactaacaacaaatttatacagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggca 100  Q
    |||||||||||||||||||||||||  ||||||  ||    | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9855 acgactccacgttttcaaactcatccgtaacaaagaaagatttcaaggaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggca 9756  T
Q  101 attggatattacaaggatccacaagttggaaggcaaaccacccattggaaaggattccagctctggacaatcgtacagaaacagagtaataagattggtg 200  Q
    |||| |||||  |||  ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||  | |||||||||||    
T  9755 attgtatatttgaagactccccaagttggaaggcaaaccacccattggaaacgattccagctctggacaatcgtacagatacagataattaagattggtg 9656  T
Q  201 aacaagtgtagttccaaagacaaggaggagaagcgccatcctt 243  Q
    ||||||||||||||||||| |||||||||| |  |||||||||    
T  9655 aacaagtgtagttccaaaggcaaggaggaggaatgccatcctt 9613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 13583 - 13548
Alignment:
Q  44 cagagaattgagttggaacaaaccccactcctctct 79  Q
    ||||||||||||||||||||||||||||||||||||    
T  13583 cagagaattgagttggaacaaaccccactcctctct 13548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2053 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 301 - 104
Alignment:
Q  48 gaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaattggatattacaaggatccacaagttggaaggcaaaccacccattg 147  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||   |||   ||||     ||||||||||||||| |||||||||     
T  301 gaattgagttggaacaaaccccactcctttcttgaagcaatcagttttgggcaattctctatataaaggtcggccaagttggaaggcaatccacccattt 202  T
Q  148 gaaaggattccagctctggacaatcgtacagaaacagagtaataagattggtgaacaagtgtagttccaaagacaaggaggagaagcgccatcctttt 245  Q
    ||||  |||||||||||||||||||||| ||| |||||| |  ||| ||||||||||||||||||   |||| ||| |||||  || |||||||||||    
T  201 gaaaccattccagctctggacaatcgtatagatacagagaatgaagtttggtgaacaagtgtagtgaaaaaggcaacgaggatgagtgccatcctttt 104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 139
Target Start/End: Complemental strand, 1841 - 1746
Alignment:
Q  44 cagagaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaattggatattacaaggatccacaagttggaaggcaaacc 139  Q
    |||||| |||||||||||||||||||  |||| |||| ||||||| |||||||||||||||  ||||| |||  | | ||||||||||||||||||    
T  1841 cagagagttgagttggaacaaacccctttcctgtctccaaccaattagttttgggcaattgtctattataagtttgctcaagttggaaggcaaacc 1746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 6575368 - 6575244
Alignment:
Q  48 gaattgagttggaacaaaccccactcctctctcgaaccaatcagttttgggcaattggatattacaaggatccacaagttggaaggcaaaccacccattg 147  Q
    ||||| |||||||||||| |||| |||||||||||| |||| |  |||||||||||   |||| ||||  | | |||||||||||||||||| |||   |    
T  6575368 gaatttagttggaacaaatcccagtcctctctcgaagcaattaactttgggcaattatttatttcaagttttctcaagttggaaggcaaacctccctcag 6575269  T
Q  148 gaaaggattccagctctggacaatc 172  Q
    |||| ||||| ||||||||||||||    
T  6575268 gaaatgattctagctctggacaatc 6575244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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