View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9360_low_36 (Length: 254)
Name: NF9360_low_36
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 33410547 - 33410774
Alignment:
| Q |
1 |
tgaaagagtgtgccatttactttgaaaacattgtgccttgaagggtcatagttgaaaactaaaaagaaggagataaaactgaattagttcatattagatt |
100 |
Q |
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| T |
33410547 |
tgaaagagtgtgccatttactttgaaaacattgtgccttgccggatcatagttgaaaactaaaaagaaagagatgaaacaaaattagttcatattagatt |
33410646 |
T |
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| Q |
101 |
aatacaagttcatctaaacaaaagttaattataaccctaattataattatgagatacactaattagttaaacaattaaatatgaagccaaatggatattt |
200 |
Q |
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| T |
33410647 |
aatacatgttcatctaaacaaaagt------------taattataattatgagatacactaattagttaaacaattgaatatgaaaccaaatggatattt |
33410734 |
T |
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| Q |
201 |
gttttttccttttattacatacctagattgtctccaacac |
240 |
Q |
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| T |
33410735 |
gttttttccttttattacatacctagattgtctccaacac |
33410774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 33424449 - 33424582
Alignment:
| Q |
1 |
tgaaagagtgtgccatttactttgaaaacattgtgccttgaagggtcatagttgaaaactaaaaagaaggagataaaactgaattagttcatattagatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |
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| T |
33424449 |
tgaaagagtgtgccatttactttgaaaacattgtgccttgccggatcatagttgaaaactaaaaagaagaagatgaaacaaaattagttcatattagatt |
33424548 |
T |
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| Q |
101 |
aatacaagttcatctaaacaaaagttaattataa |
134 |
Q |
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| T |
33424549 |
aatacatgttcatctaaacaaaagttaattataa |
33424582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 33428140 - 33428024
Alignment:
| Q |
1 |
tgaaagagtgtgccatttactttgaaaacattgtgccttgaagggtcatagttgaaaactaaaaa-gaaggagataaaactgaattagttcatattagat |
99 |
Q |
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||||||| |||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||||| |
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| T |
33428140 |
tgaaagaatgtgccgttcactttgaaaacattgtgtcttgaagggtcatagttgaaaactaaaaataaagaagataaaacgtaattagttcgtattagat |
33428041 |
T |
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| Q |
100 |
taatacaagttcatcta |
116 |
Q |
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|||||| |||||||||| |
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| T |
33428040 |
taataccagttcatcta |
33428024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 33416399 - 33416460
Alignment:
| Q |
4 |
aagagtgtgccatttactttgaaaacattgtgccttgaagggtcatagttgaaaactaaaaa |
65 |
Q |
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| T |
33416399 |
aagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttgaaaactaaaaa |
33416460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 33416504 - 33416551
Alignment:
| Q |
138 |
taattataattatgagatacactaattagttaaacaattaaatatgaa |
185 |
Q |
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| T |
33416504 |
taattataactatgagatacactaattagttaagcaattgactatgaa |
33416551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 33416563 - 33416618
Alignment:
| Q |
182 |
tgaagccaaatggatatttgttttttccttttattacatacctagattgtctccaacac |
240 |
Q |
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|||| ||||||||| |||| ||||||||||||| ||||||||| ||||||||||||| |
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| T |
33416563 |
tgaaaccaaatggacatttattttttcctttta---catacctaggttgtctccaacac |
33416618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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