View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9360_low_39 (Length: 252)

Name: NF9360_low_39
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9360_low_39
NF9360_low_39
[»] chr2 (4 HSPs)
chr2 (18-237)||(36165810-36166027)
chr2 (33-120)||(16078613-16078700)
chr2 (23-131)||(30433637-30433745)
chr2 (23-131)||(44691290-44691398)
[»] chr1 (3 HSPs)
chr1 (32-146)||(7953174-7953288)
chr1 (30-131)||(21970598-21970699)
chr1 (62-131)||(12170673-12170742)
[»] chr8 (5 HSPs)
chr8 (30-126)||(13960615-13960711)
chr8 (90-129)||(43247146-43247185)
chr8 (80-146)||(44682592-44682658)
chr8 (18-131)||(31400571-31400684)
chr8 (31-131)||(4902030-4902130)
[»] chr6 (2 HSPs)
chr6 (30-99)||(9296207-9296276)
chr6 (46-131)||(15841758-15841843)
[»] chr7 (1 HSPs)
chr7 (55-131)||(41448349-41448425)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 36165810 - 36166027
Alignment:
Q  18 caaatacacacaccttcatccatccaatccacttagaacaaaatcccactctcctcaacatatactctaagaaaccccaatcaaccgagtcgtaagtctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36165810 caaatacacacaccttcatccatccaatccacttagaacaaaatcccactctcctcaacgtatactctaagaaaccccaatcaaccgagtcgtaagtctt 36165909  T
Q  118 ttcgaaatccacctcaaagattaaacattcctttcgtcnnnnnnngcccaatccaaaacctcatccaccgctaacaccgcatcctcttagccaacacttt 217  Q
    ||||||||||| |||  ||||||||||||||||| ||        || |||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  36165910 ttcgaaatccaactc--agattaaacattccttttgtttttttttgctcaatccaaaatctcattcaccgctaacaccgcatcctcttagccaacacttt 36166007  T
Q  218 cacaattagtttatacaagc 237  Q
    ||||||||||||||||||||    
T  36166008 cacaattagtttatacaagc 36166027  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 16078700 - 16078613
Alignment:
Q  33 tcatccatccaatccacttagaacaaaatcccactctcctcaacatatactctaagaaaccccaatcaaccgagtcgtaagtcttttc 120  Q
    |||||||  |||||||||||||||||||  |||||||||||||||||||||| || |||| |||||| |||||||| |||| ||||||    
T  16078700 tcatccaagcaatccacttagaacaaaagtccactctcctcaacatatactccaaaaaactccaatccaccgagtcataagccttttc 16078613  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 30433637 - 30433745
Alignment:
Q  23 acacacaccttcatccatccaatccacttagaacaaaatcccactctcctcaacatatactctaagaaaccccaatcaaccgagtcgtaagtcttttcga 122  Q
    |||||||||||| ||||  | || || || |||||||| || |||||||||||||||||||| || || |||||| | |||||||| |||| ||| || |    
T  30433637 acacacaccttcgtccaagccattcattttgaacaaaaacctactctcctcaacatatactccaaaaatccccaacccaccgagtcataagccttctcaa 30433736  T
Q  123 aatccacct 131  Q
    |||| ||||    
T  30433737 aatcaacct 30433745  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 44691398 - 44691290
Alignment:
Q  23 acacacaccttcatccatccaatccacttagaacaaaatcccactctcctcaacatatactctaagaaaccccaatcaaccgagtcgtaagtcttttcga 122  Q
    |||||| ||||||||||  ||||||||||   ||  || |||||||| | |||||||||||| || |||| |||||| ||||| ||||| | ||| ||||    
T  44691398 acacacgccttcatccacgcaatccacttcctactcaaacccactctacccaacatatactccaaaaaactccaatccaccgaatcgtacgccttctcga 44691299  T
Q  123 aatccacct 131  Q
    |||| ||||    
T  44691298 aatcaacct 44691290  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 7953288 - 7953174
Alignment:
Q  32 ttcatccatccaatccacttagaacaaaatcccactctcctcaacatatactctaagaaaccccaatcaaccgagtcgtaagtcttttcgaaatccacct 131  Q
    |||||||| || | |||||||  || ||| ||||||||| ||||||| ||||| || ||||||||||| |||||||| |||| |||||| || || ||||    
T  7953288 ttcatccaacccacccacttatcaccaaaccccactctcatcaacatgtactccaaaaaaccccaatccaccgagtcataagccttttcaaagtcaacct 7953189  T
Q  132 caaagattaaacatt 146  Q
     || ||| |||||||    
T  7953188 taaggatcaaacatt 7953174  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 21970699 - 21970598
Alignment:
Q  30 ccttcatccatccaatccacttagaacaaaatcccactctcctcaacatatactctaagaaaccccaatcaaccgagtcgtaagtcttttcgaaatccac 129  Q
    |||||||| || | ||||| |||  |||||| |||||||||| |||||||||| | || ||||||||||| ||||| ||||||| ||| || || |||||    
T  21970699 ccttcatcaattctatccatttatcacaaaaacccactctccgcaacatatacaccaaaaaaccccaatccaccgaatcgtaagccttctcaaagtccac 21970600  T
Q  130 ct 131  Q
    ||    
T  21970599 ct 21970598  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 12170742 - 12170673
Alignment:
Q  62 cccactctcctcaacatatactctaagaaaccccaatcaaccgagtcgtaagtcttttcgaaatccacct 131  Q
    ||||||||||||| ||||||| | || || |||||||| || |||||||||| |||||| ||||| ||||    
T  12170742 cccactctcctcatcatatacaccaaaaacccccaatccacggagtcgtaagccttttcaaaatcaacct 12170673  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 13960615 - 13960711
Alignment:
Q  30 ccttcatccatccaatccacttagaacaaaatcccactctcctcaacatatactctaagaaaccccaatcaaccgagtcgtaagtcttttcgaaatc 126  Q
    ||||||||||  | ||||| || | ||| |||||||||||| ||| ||||||| | ||||| |||||||| || ||||||||||  |||||||||||    
T  13960615 ccttcatccaagctatccattttggacacaatcccactctcttcatcatatacaccaagaacccccaatccactgagtcgtaagctttttcgaaatc 13960711  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 43247185 - 43247146
Alignment:
Q  90 aaccccaatcaaccgagtcgtaagtcttttcgaaatccac 129  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  43247185 aaccccaatcaacggagtcgtaagtcttttcaaaatccac 43247146  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 44682658 - 44682592
Alignment:
Q  80 tactctaagaaaccccaatcaaccgagtcgtaagtcttttcgaaatccacctcaaagattaaacatt 146  Q
    ||||| |||||||||||||| ||||  ||||||| |||||| |||||||||| ||| || |||||||    
T  44682658 tactccaagaaaccccaatctaccgcatcgtaagccttttcaaaatccaccttaaaaatcaaacatt 44682592  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 31400684 - 31400571
Alignment:
Q  18 caaatacacacaccttcatccatccaatccacttagaacaaaatcccactctcctcaacatatactctaagaaaccccaatcaaccgagtcgtaagtctt 117  Q
    |||| ||||||||||||||| | |  | ||| || | |||||| ||||||||  ||||||| || || ||||| |||||||  |||||||| || | |||    
T  31400684 caaagacacacaccttcatctacctcacccattttgcacaaaaacccactctattcaacatgtattccaagaagccccaatttaccgagtcataggcctt 31400585  T
Q  118 ttcgaaatccacct 131  Q
    ||||||||||||||    
T  31400584 ttcgaaatccacct 31400571  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 4902130 - 4902030
Alignment:
Q  31 cttcatccatccaatccacttagaacaaaatcccactctcctcaacatatactctaagaaaccccaatcaaccgagtcgtaagtcttttcgaaatccacc 130  Q
    ||||||||| || | ||||||||||||||| ||||  || |||| ||||||| | || ||||||||||| ||||| || |||| ||| || || ||||||    
T  4902130 cttcatccaccccacccacttagaacaaaagcccatccttctcatcatatacaccaaaaaaccccaatccaccgaatcataagccttctcaaagtccacc 4902031  T
Q  131 t 131  Q
    |    
T  4902030 t 4902030  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 9296276 - 9296207
Alignment:
Q  30 ccttcatccatccaatccacttagaacaaaatcccactctcctcaacatatactctaagaaaccccaatc 99  Q
    |||||||||| ||||||||||| |||||||| || |||||   ||||||| |||| || |||||||||||    
T  9296276 ccttcatccaaccaatccactttgaacaaaaaccaactctatccaacatacactccaaaaaaccccaatc 9296207  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 15841843 - 15841758
Alignment:
Q  46 ccacttagaacaaaatcccactctcctcaacatatactctaagaaaccccaatcaaccgagtcgtaagtcttttcgaaatccacct 131  Q
    |||||||| |||||| || |||||   || |||||||||||| ||||||||||| ||||| || || | |||||| ||||||||||    
T  15841843 ccacttagcacaaaaaccaactctatacatcatatactctaaaaaaccccaatccaccgaatcatatgccttttcaaaatccacct 15841758  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 41448425 - 41448349
Alignment:
Q  55 acaaaatcccactctcctcaacatatactctaagaaaccccaatcaaccgagtcgtaagtcttttcgaaatccacct 131  Q
    |||||| |||| ||||  |||||||||||| || || |||||||| ||||| ||||||| |||||| ||||| ||||    
T  41448425 acaaaaacccaatctcgccaacatatactccaaaaacccccaatcgaccgaatcgtaagccttttcaaaatcaacct 41448349  T

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