View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9360_low_4 (Length: 585)
Name: NF9360_low_4
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 365430 - 365019
Alignment:
| Q |
1 |
ttggttatgcgcgcgcgcacacatgtgtgtgtgtataaagagagaggtaaagaaacaggatgatcactataactacaaaatatttacggtataaaattat |
100 |
Q |
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|||||||||||||| | ||||||||||||||| ||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
365430 |
ttggttatgcgcgcacacacacatgtgtgtgt--ataaagagagaggtaaagagacggaatgatcactataactacaaaatatttatggtataaaattat |
365333 |
T |
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| Q |
101 |
cgttaattcattatgaaaaaatagtagttgtatatcgttaaatgctatgatttttgccgagctatttgaagtgtatgatgagtgaatgttggtaatcaac |
200 |
Q |
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| T |
365332 |
cgttaattcattatgaaaaaatagtagttgtatatcgttaaatgctatgatttttgccgagctatttgaagtg-----------aatgttggtaatcaac |
365244 |
T |
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| Q |
201 |
aattctattcaacatgttatatgtgagataggttttttagaatccattcatctttcttgccatatgcagaactcacatttgttggtggagatttttaatt |
300 |
Q |
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| T |
365243 |
aattctattcaaaatgttatttgtgagataggttttttagaatccattcatcttcgttgccatatgcagcactcacatttgttggtgaagatttttaatt |
365144 |
T |
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| Q |
301 |
taaatgagcaaattcttaatatttccaacatgtaattagaaaagcaacttatgtgtgaatatttgggcaagctcggacgccattcaaggttaagtctgag |
400 |
Q |
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| T |
365143 |
taaatgagcaaattcttaatatttccaacatgtaattagaaaaacaacttatgtgtgaatatttgggcaagctcggatgccattcaagattaagtctgag |
365044 |
T |
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| Q |
401 |
cttttggcagacttctccgtagaag |
425 |
Q |
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| T |
365043 |
cttttggcagacttctccgtagaag |
365019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 518 - 569
Target Start/End: Complemental strand, 363761 - 363710
Alignment:
| Q |
518 |
ttgcatcataatcaattcttccaagtaacataatcgattaaggaatgaaaat |
569 |
Q |
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| T |
363761 |
ttgcatcataatcaattcttccaagtaacataatcgattaaggaattaaaat |
363710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 24183556 - 24183513
Alignment:
| Q |
186 |
atgttggtaatcaacaattctattcaacatgttatatgtgagat |
229 |
Q |
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| T |
24183556 |
atgttggtaatcaacaactctattcaacaggttatttgtgagat |
24183513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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