View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9360_low_44 (Length: 241)
Name: NF9360_low_44
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 20752940 - 20752759
Alignment:
| Q |
1 |
ttggttgcagctgaaaaagtaggtcttgccacgtcaccaccttacctctccttagtatctaaaatcaatttcaacaagaagaatgtatcattcttgcatg |
100 |
Q |
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| T |
20752940 |
ttggttgcagctgaaaaaataggtcttgccacgtcaccaccttacctctccttagtatctaaaatcaatttcaacaagaagaatgtatcattcttgcatg |
20752841 |
T |
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| Q |
101 |
gtgttaactttgcatctggaggttctggaatatttaatggcacagatccaactattgtaagtgcagttctaatttttctttt |
182 |
Q |
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| T |
20752840 |
gtgttaactttgcatctggaggtgctggaatatttaatggcacagatccaactattgtaagtgcagttcttatttttctttt |
20752759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 20758175 - 20757992
Alignment:
| Q |
5 |
ttgcagctgaaaaagtaggtcttgccacgtcaccaccttacctctccttagtatctaaaatcaatttcaacaagaagaatgtatcattcttgcatggtgt |
104 |
Q |
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| T |
20758175 |
ttgcagctgaaaaattaggccttgctacgtcacctccttacctctcactagtatctaagatcaatttcaacaagaagaatgtatcattcttggatggtgt |
20758076 |
T |
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| Q |
105 |
taactttgcatctggaggttctggaatatttaatggcacagatccaactattgtaagtgcagttctaatt-tttcttttccttc |
187 |
Q |
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| T |
20758075 |
taactttgcatctgggggtgctggtatattcaatggcacagatgaaaattttgtaagtgtaattctaattctttcttttccttc |
20757992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 20801386 - 20801281
Alignment:
| Q |
79 |
aagaatgtatcattcttgcatggtgttaactttgcatctggaggttctggaatatttaatggcacagatccaactattgtaagtgcagttctaatt-ttt |
177 |
Q |
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||||||||||| |||||| ||||||||||||||| ||||| ||| ||||||||||||| |||| |||||||| | ||||||||||||||||||| ||| |
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| T |
20801386 |
aagaatgtatccttcttgagtggtgttaactttgcctctggtggtgctggaatatttaaaggcatagatccaaattatgtaagtgcagttctaattcttt |
20801287 |
T |
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| Q |
178 |
cttttc |
183 |
Q |
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|||||| |
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| T |
20801286 |
cttttc |
20801281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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