View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9360_low_47 (Length: 240)
Name: NF9360_low_47
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_47 |
 | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30249277 - 30249496
Alignment:
| Q |
1 |
ccctatgttttatattttgtattctagcactattaacggaacactttgcctttccaaaggcgataaaacatttgtattgtggaatccaacaacagatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30249277 |
ccctatgttttatattttgtattctagcactattaacggaacactttgcctttccaaaggcgataaaacatttgtattgtggaatccaacaacagatgaa |
30249376 |
T |
|
| Q |
101 |
gtcaatgtcattcctcccagtcctagggattctgtgtcacctgattgcagcgctatgatttcttttcatggatttggttataaccgtgttagagatgact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30249377 |
gtcaatgtcattcctcccagtcctagggattctgtgtcacctga---cagcgctatgatttcttttcatggatttggttataaccgtgttagagatgact |
30249473 |
T |
|
| Q |
201 |
atacgattattaagtgtctaaat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
30249474 |
atacgattattaagtgtctaaat |
30249496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 25627762 - 25627807
Alignment:
| Q |
165 |
ttcatggatttggttataaccgtgttagagatgactatacgattat |
210 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||||||| |||||| |
|
|
| T |
25627762 |
ttcatggatttggttatgaccatgctagagatgactataagattat |
25627807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4027309 - 4027531
Alignment:
| Q |
1 |
ccctatgttttatattttgtattctagcactattaacggaacactttgcctttccaaaggcgataaaa---catttgtattgtggaatccaacaacagat |
97 |
Q |
| |
|
|||||| ||||||||| | ||||||||||| ||||||||| |||||||||||||| | ||| | | || |||||||||||||||||||||||||| |
|
|
| T |
4027309 |
ccctatcttttatattaggggttctagcactaataacggaaccctttgcctttccaatgcagatgacagtacacttgtattgtggaatccaacaacagat |
4027408 |
T |
|
| Q |
98 |
gaagtcaatgtcattcctcccagtcctagggattctgtgtcacctgattgcagcgctatgatttcttttcatggatttggttataaccgtgttagagatg |
197 |
Q |
| |
|
||| || |||||||||| ||||||||| ||| |||||||||||| |||| ||| || |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4027409 |
gaaatcgttgtcattccttccagtcctatggagtctgtgtcaccttattggagcactttgatttcttttcatggatttggttatgaccgtgttagagatg |
4027508 |
T |
|
| Q |
198 |
actatacgattattaagtgtcta |
220 |
Q |
| |
|
|||||| |||||||| ||||||| |
|
|
| T |
4027509 |
actataagattattaggtgtcta |
4027531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 34324754 - 34324952
Alignment:
| Q |
22 |
ttctagcactattaacggaacactttgcctttccaaaggcgataaaa---catttgtattgtggaatccaacaacagatgaagtcaatgtcattcctccc |
118 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||| | ||| | | || ||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
34324754 |
ttctagcactaataacggaaccctttgtctttccaatgcagatgacagtacacttgtattgtggaatccaacaacagatgaaatcgttgtcattcctccc |
34324853 |
T |
|
| Q |
119 |
agtcctagggattctgtgtcacctgattgcagcgctatgatttcttttcatggatttggttataaccgtgttagagatgactatacgattattaagtgt |
217 |
Q |
| |
|
||||||| ||| |||||||||||| |||| ||| || |||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
34324854 |
agtcctatggagtctgtgtcaccttattggagcactttgatttcttttcatggatttggttatgaccatgttagagatgactataagattattaggtgt |
34324952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 29353117 - 29352911
Alignment:
| Q |
9 |
tttatattttgtattctagcactattaacggaacactttgcctttccaaaggcgataaaac---atttgtattgtggaatccaacaacagatgaagtcaa |
105 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||| |||||||||||||| || || | | | ||||||||| ||||||||||| |||||||||||| |
|
|
| T |
29353117 |
tttatatttggggttctagcactaataacggaaccctttgcctttccaatggaaatcatagtaaacttgtattgtagaatccaacaatagatgaagtcaa |
29353018 |
T |
|
| Q |
106 |
tgtcattcctcccagtcctagggattctgtgtcacctgattgcagcgctatgatttcttttcatggatttggttataaccgtgttagagatgactatacg |
205 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||| |||| ||| || |||||| |||| |||||||||||||| || |||||||||||||||||| | |
|
|
| T |
29353017 |
tgtcattcctcccagtccaatggagtctgtgtcaccttattggagctctttgatttgtttttatggatttggttatgactgtgttagagatgactataag |
29352918 |
T |
|
| Q |
206 |
attatta |
212 |
Q |
| |
|
||||||| |
|
|
| T |
29352917 |
attatta |
29352911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 30651131 - 30651183
Alignment:
| Q |
165 |
ttcatggatttggttataaccgtgttagagatgactatacgattattaagtgt |
217 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
30651131 |
ttcatggatttggttatgaccatgttagagatgactataagattattaggtgt |
30651183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 31777477 - 31777529
Alignment:
| Q |
165 |
ttcatggatttggttataaccgtgttagagatgactatacgattattaagtgt |
217 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
31777477 |
ttcatggatttggttatgaccatgttagagatgactataagattattaggtgt |
31777529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 17650 - 17614
Alignment:
| Q |
165 |
ttcatggatttggttataaccgtgttagagatgacta |
201 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
17650 |
ttcatggatttggttatgaccatgttagagatgacta |
17614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University