View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9360_low_48 (Length: 232)
Name: NF9360_low_48
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 34944421 - 34944626
Alignment:
| Q |
18 |
aataaagggaacatatgttatggatttgccacatttaaaggcttatggatcattgatggatcagctacacttccacatgaacttgatgcaaaatatcaac |
117 |
Q |
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| T |
34944421 |
aataaagggaacatatgttatggatttgccacatttaaaggcttatggatcattgatggatcagctacacttccacatgaacttgatgcaaaatatcaac |
34944520 |
T |
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| Q |
118 |
taaggttcattgatttcatgcatgcaattatgtcaattttggttttttcagctaatgcaatgtttgatcataatgtggttaactgtttctttccatcacc |
217 |
Q |
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| T |
34944521 |
taaggttcattgatttcatgcatgcaattatgtcaattttggttttttcagctattgcaatgtttgatcataatgtggttaactgtttctttccatcacc |
34944620 |
T |
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| Q |
218 |
tccata |
223 |
Q |
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| |||| |
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| T |
34944621 |
ttcata |
34944626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 34947771 - 34947882
Alignment:
| Q |
36 |
tatggatttgccacatttaaaggcttatggatcattgatggatcagctacacttccacatgaacttgatgcaaaatatcaactaaggttcattgatttca |
135 |
Q |
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| T |
34947771 |
tatggatttgccacatttaaaggcttatggatcattgatggatcagctacacttccacatgaacttgatgcaaaatatcaactaaggttgattgatttca |
34947870 |
T |
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| Q |
136 |
tgcatgcaatta |
147 |
Q |
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| T |
34947871 |
tgcatgcaatta |
34947882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 34948774 - 34948850
Alignment:
| Q |
142 |
caattatgtcaattttggttttttcagctaatgcaatgtttgatcataatgtggttaactgtttctttccatcacct |
218 |
Q |
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| T |
34948774 |
caattatgccaatcttggttttttcagctattgcaatgtttgacgataacgtggttaactgtttccttccaccacct |
34948850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 4178970 - 4178798
Alignment:
| Q |
24 |
gggaacatatgttatggatttgccacatttaaaggcttatggatcattgatggatcagctacacttccacatgaacttgatgcaaaatatcaactaaggt |
123 |
Q |
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| T |
4178970 |
gggaatatttgttatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagt |
4178871 |
T |
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| Q |
124 |
tcattgatttcatgcatgcaattatgtcaattttggttttttcagctaatgcaatgtttgatcataatgtggt |
196 |
Q |
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| T |
4178870 |
ttatagatttcatgcatgcgatgatgtcaattctggtgtttgcagcaattgcattgtttgatcagaatgtggt |
4178798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 196
Target Start/End: Complemental strand, 4168032 - 4167871
Alignment:
| Q |
35 |
ttatggatttgccacatttaaaggcttatggatcattgatggatcagctacacttccacatgaacttgatgcaaaatatcaactaaggttcattgatttc |
134 |
Q |
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|||||| |||||||| ||||| ||||| ||| | |||||||||||| | | |||||||| | || ||| ||| ||||| | || |||| || ||||| |
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| T |
4168032 |
ttatgggtttgccacctttaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgctaaataccgcatacggtttatagatttt |
4167933 |
T |
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| Q |
135 |
atgcatgcaattatgtcaattttggttttttcagctaatgcaatgtttgatcataatgtggt |
196 |
Q |
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| T |
4167932 |
atgcatgcagtaatgtcaattctggtgtttgcagcaattgcattgtttgatcggaatgtggt |
4167871 |
T |
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