View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9360_low_49 (Length: 221)
Name: NF9360_low_49
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_49 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13520193 - 13519973
Alignment:
| Q |
1 |
ttcctattcattcatcattcaaaactccatattcaaccgaaatctaacaaattcttcaaatgaattcgaatctaacgaatatgaatccagattcaaccca |
100 |
Q |
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| T |
13520193 |
ttcctattcattcatcattcaaaaatccatattcaacccaaatctaacaaattcttcaaatgaattcgaatctaacgaatatgaatccagattcaaccca |
13520094 |
T |
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| Q |
101 |
gtaaaacgaatacgaatctaacaaattattcaaacaaatctgaatcattcatcgtgttgttcatcggagctgtttctgtattccgtggcggcgggtttgt |
200 |
Q |
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| T |
13520093 |
gtaaaacgaatacgaatctaacaaattattcaaacaaatctgaatcattcatggtgttgttcatccgagctgtttccgtattccgtggaggcgtgattgt |
13519994 |
T |
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| Q |
201 |
gcaaattgaagaacataggaa |
221 |
Q |
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| T |
13519993 |
gcagattgaagagcataggaa |
13519973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 4126001 - 4125917
Alignment:
| Q |
63 |
aattcgaatctaacgaatatgaatccagattcaacccagtaaaacgaatacgaatctaacaaattattcaaacaaatctgaatca |
147 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| |
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| T |
4126001 |
aatttgaatctaacgaatatgaatccagattcaacccagtaaaacgaatacgaatccaacaaattcttcaaacgaatctgaatca |
4125917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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