View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9360_low_5 (Length: 498)

Name: NF9360_low_5
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9360_low_5
NF9360_low_5
[»] chr7 (23 HSPs)
chr7 (13-482)||(2682572-2683040)
chr7 (183-258)||(8577927-8578002)
chr7 (183-252)||(13806689-13806758)
chr7 (431-482)||(2688071-2688122)
chr7 (183-257)||(38859563-38859637)
chr7 (183-260)||(23182391-23182468)
chr7 (183-260)||(31743630-31743707)
chr7 (188-260)||(32823440-32823512)
chr7 (183-266)||(8770365-8770447)
chr7 (183-258)||(41769289-41769364)
chr7 (186-260)||(30936095-30936168)
chr7 (276-333)||(2687751-2687808)
chr7 (183-260)||(5215353-5215430)
chr7 (183-252)||(19345941-19346009)
chr7 (183-260)||(21919689-21919766)
chr7 (199-260)||(27567161-27567222)
chr7 (183-252)||(27800037-27800106)
chr7 (183-260)||(42584090-42584167)
chr7 (183-260)||(44963824-44963900)
chr7 (183-252)||(45701040-45701108)
chr7 (191-260)||(45857476-45857544)
chr7 (395-439)||(2688627-2688671)
chr7 (224-260)||(29688925-29688961)
[»] chr6 (9 HSPs)
chr6 (183-260)||(10887810-10887887)
chr6 (183-260)||(1705934-1706011)
chr6 (183-257)||(7344325-7344399)
chr6 (183-269)||(20469028-20469113)
chr6 (183-260)||(2994323-2994400)
chr6 (183-252)||(21998943-21999011)
chr6 (183-220)||(24159529-24159566)
chr6 (183-220)||(26315778-26315815)
chr6 (224-260)||(14507990-14508026)
[»] chr8 (12 HSPs)
chr8 (183-246)||(42164922-42164985)
chr8 (183-259)||(30777274-30777350)
chr8 (183-260)||(31893334-31893411)
chr8 (183-249)||(6804020-6804086)
chr8 (184-258)||(39722284-39722358)
chr8 (183-260)||(17642402-17642478)
chr8 (183-259)||(34520899-34520975)
chr8 (191-238)||(43049872-43049919)
chr8 (190-252)||(12107493-12107555)
chr8 (183-252)||(12801434-12801503)
chr8 (183-252)||(27970340-27970408)
chr8 (183-252)||(35754468-35754536)
[»] chr1 (16 HSPs)
chr1 (183-257)||(44979201-44979276)
chr1 (192-257)||(26423845-26423910)
chr1 (183-260)||(49982457-49982534)
chr1 (183-260)||(44808733-44808810)
chr1 (183-260)||(50239278-50239354)
chr1 (184-260)||(23539943-23540019)
chr1 (192-252)||(51004799-51004859)
chr1 (183-242)||(2665524-2665583)
chr1 (183-257)||(43146751-43146823)
chr1 (183-260)||(32912212-32912289)
chr1 (183-260)||(40054916-40054993)
chr1 (183-252)||(40868143-40868211)
chr1 (183-252)||(41568773-41568841)
chr1 (183-260)||(43916347-43916424)
chr1 (183-252)||(51873283-51873351)
chr1 (183-267)||(7122284-7122367)
[»] chr4 (18 HSPs)
chr4 (183-260)||(32570696-32570773)
chr4 (183-260)||(34584183-34584260)
chr4 (183-260)||(36091387-36091463)
chr4 (190-252)||(595305-595367)
chr4 (191-257)||(9579668-9579734)
chr4 (191-257)||(9585363-9585429)
chr4 (183-269)||(3690840-3690927)
chr4 (183-257)||(25607694-25607768)
chr4 (183-257)||(52940809-52940883)
chr4 (191-260)||(9858586-9858654)
chr4 (183-220)||(18051977-18052014)
chr4 (183-260)||(19527052-19527129)
chr4 (183-260)||(22077694-22077771)
chr4 (186-259)||(31908774-31908846)
chr4 (183-252)||(39412178-39412247)
chr4 (183-252)||(49286697-49286766)
chr4 (224-260)||(4491225-4491261)
chr4 (183-259)||(39103539-39103615)
[»] chr2 (15 HSPs)
chr2 (183-260)||(38073107-38073184)
chr2 (183-257)||(8362405-8362479)
chr2 (183-260)||(12002673-12002750)
chr2 (183-260)||(37781867-37781944)
chr2 (183-257)||(25712722-25712796)
chr2 (183-260)||(11088554-11088631)
chr2 (183-260)||(15362470-15362547)
chr2 (183-260)||(42640851-42640928)
chr2 (195-257)||(12071494-12071556)
chr2 (191-237)||(12547704-12547750)
chr2 (183-260)||(12182887-12182964)
chr2 (183-252)||(15334098-15334167)
chr2 (183-260)||(25740315-25740392)
chr2 (183-260)||(41555432-41555509)
chr2 (183-260)||(45690500-45690577)
[»] chr5 (16 HSPs)
chr5 (183-257)||(19189436-19189510)
chr5 (183-257)||(23408581-23408655)
chr5 (183-260)||(13091242-13091318)
chr5 (183-260)||(35162639-35162716)
chr5 (192-260)||(4039470-4039538)
chr5 (183-260)||(29996824-29996901)
chr5 (183-240)||(41802436-41802493)
chr5 (183-258)||(5140672-5140747)
chr5 (183-260)||(5204618-5204695)
chr5 (183-252)||(9499731-9499799)
chr5 (183-260)||(14967560-14967636)
chr5 (183-260)||(29744231-29744307)
chr5 (183-252)||(36410236-36410304)
chr5 (183-260)||(39939034-39939111)
chr5 (183-260)||(39979672-39979749)
chr5 (183-260)||(40563116-40563192)
[»] chr3 (8 HSPs)
chr3 (183-257)||(52776453-52776527)
chr3 (183-257)||(15298216-15298289)
chr3 (183-260)||(29698323-29698400)
chr3 (183-250)||(25480309-25480376)
chr3 (183-220)||(4393312-4393349)
chr3 (183-220)||(27102635-27102672)
chr3 (191-260)||(48795440-48795509)
chr3 (183-220)||(49079805-49079842)
[»] scaffold0271 (1 HSPs)
scaffold0271 (183-260)||(16989-17066)


Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 13 - 482
Target Start/End: Complemental strand, 2683040 - 2682572
Alignment:
Q  13 tttcgtgttcatactcaaatcatccacaaccatcttacttaagaaaaacgagattgatatgagtttacaaatgtgtgttaaagttttgnnnnnnnatagg 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  2683040 tttcgtgttcatactcaaatcatccacaaccatcttatttaagaaaaacgagattgatatgagtttacaaatgtgtgttaaagttttgtttttttatagg 2682941  T
Q  113 ctaaggggagtacaaaaaggacactccaccctattacaaaggggtgataagtcaaattacagtcgggcggaaatgatcgttaaattataaatttttaaag 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  2682940 ctaaggggagtacaaaaaggacactccaccctattacaa-ggggtgataagtctaattacagtcgggcggaaatgatcgttaaattataaatttttaaaa 2682842  T
Q  213 taagagtatttgtacaccttaatttatgaggtgtaccgtataagttccgatataaaaatcatatcatttatataacatacaattgacgaagccgcattag 312  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  2682841 taagagtattcgtacacctcaatttatgaggtgtaccgtataagttccgatataaaaatcatatcatttatataacatacaattgacaaagctgcattag 2682742  T
Q  313 tcccttctctttcggactattgatcccaagctcgggctagctagatgagtgaatcatatcactcactatggatgagggaaataaaagtcttattaaataa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2682741 tcccttctctttcggactattgatcccaagctcgggctagctagatgagtgaatcatatcactcactatggatgagggaaataaaagtcttattaaataa 2682642  T
Q  413 tacaagaatcttttaccattgaaaattctttcaaatcctaatgcaattcattgcaatgaatatcctaatt 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2682641 tacaagaatcttttaccattgaaaattctttcaaatcctaatgcaattcattgcaatgaatatcctaatt 2682572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 8578002 - 8577927
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagtt 258  Q
    ||||||||||||| |||||||||| | ||||||||||||| |||||||| ||||||||||||||||| || |||||    
T  8578002 aaatgatcgttaatttataaatttatgaagtaagagtattggtacacctcaatttatgaggtgtaccatagaagtt 8577927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 13806689 - 13806758
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||| ||||||||||||||||||||| ||||| ||||| | |||||||| ||||||||| ||||||||||    
T  13806689 aaataatcgttaaattataaatttttgaagtaggagtactggtacacctcaatttatgaagtgtaccgta 13806758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 2688122 - 2688071
Alignment:
Q  431 ttgaaaattctttcaaatcctaatgcaattcattgcaatgaatatcctaatt 482  Q
    ||||||||||||||||||||||||||||| |||  ||||||| |||||||||    
T  2688122 ttgaaaattctttcaaatcctaatgcaatacatcccaatgaaaatcctaatt 2688071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 38859563 - 38859637
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||| ||||| ||||||||||||||| ||||| |||||   |||||||| ||||||| |||||||||||| ||||    
T  38859563 aaataatcgtaaaattataaatttttgaagtaggagtaccagtacacctcaatttataaggtgtaccgtagaagt 38859637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 23182468 - 23182391
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||| ||||| ||| ||| | |||||   |||||||||||||| |||||||||||||| |||||||    
T  23182468 aaataatcgttaaattgtaaatatttgaagcaggagtaccagtacaccttaatttgtgaggtgtaccgtagaagttcc 23182391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 31743630 - 31743707
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||||||||||||| ||| | |||||   |||||||  ||||| |||||||||||||| |||||||    
T  31743630 aaataatcgttaaattataaatttttgaagcaggagtaccggtacaccacaatttgtgaggtgtaccgtagaagttcc 31743707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 32823440 - 32823512
Alignment:
Q  188 atcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||||||||||||||||| ||| | ||||||  |||||||| ||||| |  ||||||||||| |||||||    
T  32823440 atcgttaaattataaatttttgaagcaggagtatcggtacacctcaatttgtttggtgtaccgtagaagttcc 32823512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 8770447 - 8770365
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttccgatata 266  Q
    ||||||| ||||| ||||| |||||| ||| ||||||||  ||||||||||||||  | ||||||||||||||| ||| |||||    
T  8770447 aaatgatagttaatttatagatttttgaagcaagagtatcggtacaccttaatttgcg-ggtgtaccgtataagatcccatata 8770365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 41769364 - 41769289
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagtt 258  Q
    |||| |||||||||||||||| |||| ||| | |||||   |||||||| ||||||||||||||| |||| |||||    
T  41769364 aaataatcgttaaattataaaattttgaagcaggagtaccagtacacctcaatttatgaggtgtatcgtagaagtt 41769289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 30936168 - 30936095
Alignment:
Q  186 tgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||| |||||||||||| |||||||||||   ||||||||||||||  | ||||||||||| |||||||    
T  30936168 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcg-ggtgtaccgtagaagttcc 30936095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 2687808 - 2687751
Alignment:
Q  276 tcatttatataacatacaattgacgaagccgcattagtcccttctctttcggactatt 333  Q
    ||||| ||||||||||||||||||||||| |||| |  || ||||||||||| |||||    
T  2687808 tcattcatataacatacaattgacgaagctgcatcacccctttctctttcggcctatt 2687751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 5215353 - 5215430
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||| ||||| ||||||| | |||||   |||||||| ||||| ||| |||||||||| |||||||    
T  5215353 aaataatcgttaaattgtaaatatttaaagcaggagtaccggtacacctcaatttgtgatgtgtaccgtagaagttcc 5215430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 19345941 - 19346009
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||||||| |||| |||||||||| | ||| | ||||||  |||||||| ||||||||||||||||||||    
T  19345941 aaatgatcattaatttataaatttatgaagca-gagtatcggtacacctcaatttatgaggtgtaccgta 19346009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 21919766 - 21919689
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||| ||||| ||| ||| | |||||   |||||||| ||||| |||||||||||||| |||||||    
T  21919766 aaataatcgttaaattgtaaatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcc 21919689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 27567222 - 27567161
Alignment:
Q  199 ataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||||| | |||||||||||||   |||||||| ||||| |||||||||||||| |||||||    
T  27567222 ataaatctataaagtaagagtaccggtacacctaaatttgtgaggtgtaccgtaaaagttcc 27567161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 27800106 - 27800037
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||||||| |||| |||||||||| || ||  ||||||   |||||||| ||||||||||||||||||||    
T  27800106 aaatgatctttaatttataaatttatagagcgagagtaccggtacacctcaatttatgaggtgtaccgta 27800037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 42584090 - 42584167
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||||||| |||| |||||||||| | ||| | ||||||  |||||| | ||||| |||||||||||||| |||||||    
T  42584090 aaatgatcattaatttataaatttatgaagcaggagtatcggtacacatcaatttgtgaggtgtaccgtagaagttcc 42584167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 44963900 - 44963824
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||| ||||| |||||||||||| |||||||||||   ||||||||||| || || |||||||| || |||||||    
T  44963900 aaatgatagttaatttataaatttttgaagtaagagtaccggtacaccttaaattgtg-ggtgtaccatagaagttcc 44963824  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 45701108 - 45701040
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||||||| |||| |||||||||| | ||| | ||||||  |||||||| ||||||||||||||||||||    
T  45701108 aaatgatcattaatttataaatttatgaagca-gagtatcggtacacctcaatttatgaggtgtaccgta 45701040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 45857544 - 45857476
Alignment:
Q  191 gttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||| |||||||||||| |||||||||||   ||||||||||||||  | ||||||||||| |||||||    
T  45857544 gttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcg-ggtgtaccgtaaaagttcc 45857476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 439
Target Start/End: Complemental strand, 2688671 - 2688627
Alignment:
Q  395 aaaagtcttattaaataatacaagaatcttttaccattgaaaatt 439  Q
    |||||| ||||||||| ||| |||||| |||||||||||||||||    
T  2688671 aaaagttttattaaatgatataagaatattttaccattgaaaatt 2688627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 29688961 - 29688925
Alignment:
Q  224 gtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||||||| |||||||||||||||||||| |||||||    
T  29688961 gtacacctcaatttatgaggtgtaccgtagaagttcc 29688925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 10887887 - 10887810
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||||||||||||| ||||| |||||   |||||||| |||||||||||||||||||| |||||||    
T  10887887 aaataatcgttaaattataaatttttgaagtaggagtaccggtacacctcaatttatgaggtgtaccgtagaagttcc 10887810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 1705934 - 1706011
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||||||||| ||| ||| | |||||   |||||||| |||||||||||||||||||| |||||||    
T  1705934 aaataatcgttaaattataaatatttgaagcaggagtaccggtacacctcaatttatgaggtgtaccgtagaagttcc 1706011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 7344399 - 7344325
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||| ||| |||||||||||||||||  |||| |||||   |||||||| |||||||| ||||||||||| ||||    
T  7344399 aaataatccttaaattataaatttttggagtaggagtaccggtacacctcaatttatgtggtgtaccgtagaagt 7344325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 20469113 - 20469028
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttccgatataaaa 269  Q
    ||||||| ||||| ||||| |||||| |||||||||||   |||||||||||||||| ||||||| |||| || |||| ||| ||||    
T  20469113 aaatgatagttaatttatagatttttgaagtaagagtacccgtacaccttaatttat-aggtgtatcgtagaaattcccataaaaaa 20469028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 2994400 - 2994323
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||| ||||| ||| ||| | |||||   |||||||| |||||||||||||||| ||| |||||||    
T  2994400 aaataatcgttaaattgtaaatatttgaagcaggagtaccggtacacctcaatttatgaggtgtactgtagaagttcc 2994323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 21998943 - 21999011
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||||||| |||| |||||||||| | ||| | ||||||  |||||||| ||||||||||||||||||||    
T  21998943 aaatgatcattaatttataaatttatgaagca-gagtatcggtacacctcaatttatgaggtgtaccgta 21999011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 24159566 - 24159529
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagta 220  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  24159566 aaataatcgttaaattataaatttttaaagtaggagta 24159529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 26315778 - 26315815
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagta 220  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  26315778 aaataatcgttaaattataaatttttgaagtaagagta 26315815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 14507990 - 14508026
Alignment:
Q  224 gtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||||||| |||||||||||||||||||| |||||||    
T  14507990 gtacacctcaatttatgaggtgtaccgtagaagttcc 14508026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 42164985 - 42164922
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgt 246  Q
    |||| ||||||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||    
T  42164985 aaataatcgttaaattataaatttttaaagtatgagtatcggtacacctcaatttatgaggtgt 42164922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 30777350 - 30777274
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttc 259  Q
    ||||||||||||| | |||||||| ||||| | ||||||  |||||||| |||||||||||||||||||| ||||||    
T  30777350 aaatgatcgttaattcataaatttataaagcaggagtatcggtacacctcaatttatgaggtgtaccgtagaagttc 30777274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 31893411 - 31893334
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||||||||||||||||||||||||| ||  | ||||||  |||||||| ||||| ||||||||| |||| |||||||    
T  31893411 aaatgatcgttaaattataaatttttgaaacaggagtatcggtacacctcaatttgtgaggtgtaacgtagaagttcc 31893334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 6804086 - 6804020
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtacc 249  Q
    ||||||| |||||||||||||||||| ||  |||||||   |||||||| |||||||||||||||||    
T  6804086 aaatgattgttaaattataaatttttgaatcaagagtaccggtacacctcaatttatgaggtgtacc 6804020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 39722284 - 39722358
Alignment:
Q  184 aatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagtt 258  Q
    |||||||| ||| |||| ||||| | ||| ||||||| | |||||||| |||||||||||||||||||| |||||    
T  39722284 aatgatcgataatttatcaatttattaagcaagagtactagtacacctcaatttatgaggtgtaccgtagaagtt 39722358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 17642402 - 17642478
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||| ||||| |||||||||||| |||||||||||   ||||||||||||||  | ||||||||||| |||||||    
T  17642402 aaatgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcg-ggtgtaccgtagaagttcc 17642478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 34520899 - 34520975
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttc 259  Q
    ||||||||||||| | |||||||| | ||||| ||||||   ||||||| ||||| |||||||||||||| ||||||    
T  34520899 aaatgatcgttaattcataaatttatgaagtaggagtatcgatacacctcaatttgtgaggtgtaccgtagaagttc 34520975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 43049872 - 43049919
Alignment:
Q  191 gttaaattataaatttttaaagtaagagtatttgtacaccttaattta 238  Q
    ||||| ||||| |||||| ||||||||||||| |||||||||||||||    
T  43049872 gttaatttatagatttttgaagtaagagtattggtacaccttaattta 43049919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 12107555 - 12107493
Alignment:
Q  190 cgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||||| |||||||||||| ||||| |||||   |||||||| |||||||||| |||||||||    
T  12107555 cgttaagttataaatttttgaagtaggagtaccggtacacctcaatttatgagatgtaccgta 12107493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 12801434 - 12801503
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||||||| |||| |||||||||| || ||  ||||||   |||||||| ||||||||||||||||||||    
T  12801434 aaatgatctttaatttataaatttatagagcgagagtaccggtacacctcaatttatgaggtgtaccgta 12801503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 27970340 - 27970408
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||| ||| ||||||||||||||||| ||||| |||||   |||||||| |||||||| |||||||||||    
T  27970340 aaataatccttaaattataaatttttgaagta-gagtaccggtacacctcaatttatgtggtgtaccgta 27970408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 35754536 - 35754468
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||| |||||||||| |||||||||| ||||| |||||    |||||||||||||||||| |||||||||    
T  35754536 aaataatcgttaaat-ataaatttttgaagtaggagtaccgatacaccttaatttatgagatgtaccgta 35754468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 44979201 - 44979276
Alignment:
Q  183 aaatgatcgttaaattataaatttt-taaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||| |||||||||||||||||||| ||||||| |||||   ||||||||||||||||||||||||||||| ||||    
T  44979201 aaataatcgttaaattataaattttttaaagtaggagtaccagtacaccttaatttatgaggtgtaccgtagaagt 44979276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 26423910 - 26423845
Alignment:
Q  192 ttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    ||||||||||||||||| ||||| |||||   ||||||||||||||||||||||||||||| ||||    
T  26423910 ttaaattataaatttttgaagtaggagtaccggtacaccttaatttatgaggtgtaccgtagaagt 26423845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 49982534 - 49982457
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||| ||||| |||||||||| || || | ||||||  |||||||| |||||||||||||||||||| |||||||    
T  49982534 aaatgattgttaatttataaatttatatagcaggagtatcggtacacctcaatttatgaggtgtaccgtagaagttcc 49982457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 44808733 - 44808810
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||||||||| ||| ||| | ||||||  |||||||| ||||| |||| ||||||||| |||||||    
T  44808733 aaataatcgttaaattataaatatttgaagcaggagtatcggtacacctcaatttgtgagatgtaccgtagaagttcc 44808810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 50239354 - 50239278
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||| ||||| |||||||||||| |||||||||||   ||||||||||||||  | ||||||||||| |||||||    
T  50239354 aaatgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcg-ggtgtaccgtagaagttcc 50239278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 23540019 - 23539943
Alignment:
Q  184 aatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||| |||||| |||||| || |||||||   |||||||| ||||| |||||||||||||| |||||||    
T  23540019 aatggtcgttaatttataattttttagagcaagagtaccggtacacctcaatttctgaggtgtaccgtagaagttcc 23539943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 51004859 - 51004799
Alignment:
Q  192 ttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    ||||||||||||||||| ||||| |||||   |||||||| ||||| ||||||||||||||    
T  51004859 ttaaattataaatttttgaagtaggagtaccggtacacctcaatttgtgaggtgtaccgta 51004799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 2665524 - 2665583
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgag 242  Q
    ||||||||||||| ||||| |||||  ||||||||| ||| |||||||||||||| ||||    
T  2665524 aaatgatcgttaatttatatattttggaagtaagagcattggtacaccttaatttgtgag 2665583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 43146751 - 43146823
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||| ||||||||||||||||||||| ||||| |||||   |||||||| ||||  |||||||||||||| ||||    
T  43146751 aaataatcgttaaattataaatttttgaagtaggagtaccagtacacctcaatt--tgaggtgtaccgtagaagt 43146823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 32912289 - 32912212
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||||||||| |||||||||| | |||| ||||||    ||||||| ||||| |||||||||| ||| |||||||    
T  32912289 aaatgatcgttaatttataaatttatgaagtgagagtaccgatacacctcaatttgtgaggtgtactgtagaagttcc 32912212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 40054916 - 40054993
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||| ||||| ||| ||| | |||||   |||||||| ||||| |||||||||||||| |||||||    
T  40054916 aaataatcgttaaattgtaaatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcc 40054993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 40868211 - 40868143
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||||||| |||| |||||||||| | ||| | ||||||  |||||||| ||||||||||||||||||||    
T  40868211 aaatgatcattaatttataaatttatgaagca-gagtatcggtacacctcaatttatgaggtgtaccgta 40868143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 41568773 - 41568841
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||||||| |||| |||||||||| ||||| | ||||||  |||||||| ||||| ||||||||||||||    
T  41568773 aaatgatcattaatttataaatttataaagca-gagtatcggtacacctaaatttgtgaggtgtaccgta 41568841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 43916424 - 43916347
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||| ||||| ||| ||| | |||||   |||||||| ||||| |||||||||||||| |||||||    
T  43916424 aaataatcgttaaattgtaaatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcc 43916347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 51873351 - 51873283
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||||||| |||| |||||||||| | ||| | |||||| ||||||||| ||||| ||||||||||||||    
T  51873351 aaatgatcattaatttataaatttatgaagca-gagtatctgtacacctcaatttgtgaggtgtaccgta 51873283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 7122284 - 7122367
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttccgatataa 267  Q
    ||||||| ||||| |||||||||||| |||||||||||   |||||| |||| || || ||||||| ||| ||||||| ||||||    
T  7122284 aaatgatagttaatttataaatttttgaagtaagagtaccggtacactttaaattgtg-ggtgtactgtagaagttcccatataa 7122367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 32570696 - 32570773
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||||||||| |||||||||| | |||||||||||   |||||||| ||||| |||||||||||||| |||||||    
T  32570696 aaatgatcgttaatttataaatttatgaagtaagagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcc 32570773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 34584260 - 34584183
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||||||||||||| |||   ||||||  |||||||| ||||| |||||||||||||| |||||||    
T  34584260 aaataatcgttaaattataaatttttgaagctggagtatcggtacacctcaatttgtgaggtgtaccgtagaagttcc 34584183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 36091387 - 36091463
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||| ||||| |||||||||||| |||||||||||   |||||||||||||||  |||||||||||| |||||||    
T  36091387 aaatgatagttaatttataaatttttgaagtaagagtaccggtacaccttaattta-caggtgtaccgtagaagttcc 36091463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 595367 - 595305
Alignment:
Q  190 cgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    ||||||||||||||||||| ||||| |||||   |||||||| ||||| ||||||||||||||    
T  595367 cgttaaattataaatttttgaagtaggagtaccggtacacctcaatttgtgaggtgtaccgta 595305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 9579734 - 9579668
Alignment:
Q  191 gttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||||||||||||||||| ||||| |||||   ||||| || |||||||||||||||||||| ||||    
T  9579734 gttaaattataaatttttgaagtaggagtaccagtacaactcaatttatgaggtgtaccgtagaagt 9579668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 9585429 - 9585363
Alignment:
Q  191 gttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||||||||||||||||| ||||| |||||   ||||| || |||||||||||||||||||| ||||    
T  9585429 gttaaattataaatttttgaagtaggagtaccagtacaactcaatttatgaggtgtaccgtagaagt 9585363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 3690840 - 3690927
Alignment:
Q  183 aaatgatcgttaaatt-ataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttccgatataaaa 269  Q
    |||| ||||||||||| |||||||| | ||||| || |||   ||||||| ||||| |||||||||||||| ||||||| ||||||||    
T  3690840 aaataatcgttaaatttataaatttatgaagtaggaatatcgatacacctcaatttgtgaggtgtaccgtagaagttcccatataaaa 3690927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 25607768 - 25607694
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||| |||||||| |||||||||| | |||| ||||||   |||||||| ||||| |||||||||||||| ||||    
T  25607768 aaataatcgttaatttataaatttatgaagtgagagtaccggtacacctcaatttgtgaggtgtaccgtagaagt 25607694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 52940809 - 52940883
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||| ||| ||||||| ||||||||| |||||||| ||   |||||||| |||||||| ||||||||||| ||||    
T  52940809 aaataatccttaaattctaaatttttgaagtaagaataccggtacacctcaatttatgtggtgtaccgtagaagt 52940883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 9858586 - 9858654
Alignment:
Q  191 gttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||| |||||||||||| |||||||||||   ||||||||||||||   |||||||||||| |||||||    
T  9858586 gttaatttataaatttttgaagtaagagtaccggtacaccttaattt-gcaggtgtaccgtagaagttcc 9858654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 18052014 - 18051977
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagta 220  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  18052014 aaataatcgttaaattataaatttttgaagtaagagta 18051977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 19527052 - 19527129
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||| ||||| ||| ||| | |||||   |||||||| ||||| |||||||||||||| |||||||    
T  19527052 aaataatcgttaaattgtaaatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcc 19527129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 22077694 - 22077771
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||||||||||||||||||||||||| ||| | |||||   |||||||| |    ||||||||||||||| |||||||    
T  22077694 aaatgatcgttaaattataaatttttgaagcaggagtaccggtacacctcacaaaatgaggtgtaccgtagaagttcc 22077771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 31908774 - 31908846
Alignment:
Q  186 tgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttc 259  Q
    |||| ||||| |||||||||||| |||||||||||   ||||||||||||||  | ||||||||||| ||||||    
T  31908774 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcg-ggtgtaccgtagaagttc 31908846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 39412247 - 39412178
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    ||||||| ||||| |||||||||| |  || | ||||||  |||||||||||||| ||||||||||||||    
T  39412247 aaatgattgttaatttataaatttatgtagcaggagtatcggtacaccttaatttgtgaggtgtaccgta 39412178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 49286766 - 49286697
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||| ||||||||||| ||||| ||| ||||| |||||   |||||||| ||||| ||||||||||||||    
T  49286766 aaataatcgttaaattgtaaatatttgaagtaggagtaccggtacacctcaatttgtgaggtgtaccgta 49286697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 4491225 - 4491261
Alignment:
Q  224 gtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||||||| |||||||||||||||||||| |||||||    
T  4491225 gtacacctcaatttatgaggtgtaccgtagaagttcc 4491261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 39103615 - 39103539
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttc 259  Q
    |||| ||||||||||| ||||| ||| ||| | |||||   |||||||| ||||| |||||||||||||| ||||||    
T  39103615 aaataatcgttaaattgtaaatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttc 39103539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 38073184 - 38073107
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||||||||| |||||||||| | |||||||||||   |||||||| ||||| |||||||||||||| |||||||    
T  38073184 aaatgatcgttaatttataaatttatgaagtaagagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcc 38073107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 8362479 - 8362405
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||| ||||||||||||||||||||| || || |||||   |||||||| |||||||||||||||||||| ||||    
T  8362479 aaataatcgttaaattataaatttttgaaataggagtaccagtacacctcaatttatgaggtgtaccgtagaagt 8362405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 12002673 - 12002750
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||||||||||||||||||||||||| ||  ||||    ||||||| ||||| |||||||||||||| |||||||    
T  12002673 aaatgatcgttaaattataaatttttaaaatagaagtaccgatacacctcaatttgtgaggtgtaccgtagaagttcc 12002750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 37781944 - 37781867
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||||||| | |||||||||| | ||| |||||||  ||||||||| ||||| |||||||||||||| |||||||    
T  37781944 aaatgatcgttcatttataaatttatgaaggaagagtacatgtacacctcaatttgtgaggtgtaccgtagaagttcc 37781867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 25712796 - 25712722
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||| ||||||||||||||||||||| |||||  |||||  ||||||||   |||||||||||||||||| ||||    
T  25712796 aaataatcgttaaattataaatttttgaagtagaagtatcggtacacctcggtttatgaggtgtaccgtagaagt 25712722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 11088554 - 11088631
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||| ||||| |||||||||| |  || ||||||| | |||||||| ||||| |||||||||||||| |||||||    
T  11088554 aaatgattgttaatttataaatttatggaggaagagtactggtacacctcaatttgtgaggtgtaccgtagaagttcc 11088631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 15362547 - 15362470
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||||||||| ||| ||| | |||||   |||||||| ||||||| |||||||||||| |||||||    
T  15362547 aaataatcgttaaattataaatatttgaagcaggagtaccggtacacctcaatttataaggtgtaccgtagaagttcc 15362470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 42640928 - 42640851
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||||||||| |||||||||| | |||||||||||   ||| |||| ||||| |||||||| ||||| |||||||    
T  42640928 aaatgatcgttaatttataaatttatgaagtaagagtaccggtatacctcaatttgtgaggtgtgccgtagaagttcc 42640851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 12071494 - 12071556
Alignment:
Q  195 aattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||||||||||||| ||||| |||||   |||||||| ||||||||||||||| |||| ||||    
T  12071494 aattataaatttttgaagtaggagtaccggtacacctcaatttatgaggtgtaacgtagaagt 12071556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 12547704 - 12547750
Alignment:
Q  191 gttaaattataaatttttaaagtaagagtatttgtacaccttaattt 237  Q
    ||||| |||||||||||| ||||||||||| | ||||||||||||||    
T  12547704 gttaatttataaatttttgaagtaagagtactcgtacaccttaattt 12547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 12182887 - 12182964
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| |||||||| |||| ||||| |||||||||||||   |||||||| | ||| | |||||||||||| |||||||    
T  12182887 aaataatcgttaatttatcaatttataaagtaagagtaccggtacacctcattttgttaggtgtaccgtagaagttcc 12182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 15334167 - 15334098
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||||||| ||||||||||||||||| ||||| || ||   |||||||| ||||| ||| ||||||||||    
T  15334167 aaatgatcattaaattataaatttttcaagtaggaataccggtacacctcaatttgtgaagtgtaccgta 15334098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 25740315 - 25740392
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||||| ||| |||||| ||| | ||  ||||||||  |||||||| |||||||||||| ||||||| |||||||    
T  25740315 aaatgatcggtaatttataattttatgaaacaagagtatcggtacacctcaatttatgaggtataccgtagaagttcc 25740392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 41555509 - 41555432
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||| ||||| ||| ||| | |||||   |||||||| ||||| |||||||||||||| |||||||    
T  41555509 aaataatcgttaaattgtaaatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcc 41555432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 45690577 - 45690500
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||||||| |||| |||||||||| || ||  ||||||   |||||||| ||||| |||||||||||||| |||||||    
T  45690577 aaatgatccttaatttataaatttatagagcgagagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcc 45690500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 19189436 - 19189510
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||| ||||||||||||||||||||| ||||| |||||   | |||||| |||||||||||||||||||| ||||    
T  19189436 aaataatcgttaaattataaatttttgaagtaggagtacgagcacacctcaatttatgaggtgtaccgtagaagt 19189510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 23408581 - 23408655
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||||||||||||||||||||||||| |||||  || | | |||||||| ||||||||| |||||||||| ||||    
T  23408581 aaatgatcgttaaattataaatttttgaagtagaagcactggtacacctcaatttatgaagtgtaccgtagaagt 23408655  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 13091242 - 13091318
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||| ||||| |||||||||||| |||||||||||   ||||||||||||||| | ||||||||||| |||||||    
T  13091242 aaatgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttacg-ggtgtaccgtagaagttcc 13091318  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 35162639 - 35162716
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||||||||| |||||||||| | ||| |||||||    ||||||||||||||||||||||| |||| |||||||    
T  35162639 aaatgatcgttaatttataaatttatgaagcaagagtaccaatacaccttaatttatgaggtgtaacgtagaagttcc 35162716  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 4039538 - 4039470
Alignment:
Q  192 ttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| |||||||||| | |||||||||||   |||||||||||||| |||||||||||||| |||||||    
T  4039538 ttaatttataaatttatgaagtaagagtaccggtacaccttaatttgtgaggtgtaccgtagaagttcc 4039470  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 29996824 - 29996901
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||||||||| |||||||||| || || |||||||   ||| |||||||||| ||| |||||||||| |||||||    
T  29996824 aaatgatcgttaatttataaatttatagagcaagagtaccggtaaaccttaatttgtgatgtgtaccgtagaagttcc 29996901  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 41802436 - 41802493
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatg 240  Q
    ||||||| ||||| ||||||||||||||| ||||||||   |||||||||||||||||    
T  41802436 aaatgatagttaatttataaatttttaaaataagagtaccagtacaccttaatttatg 41802493  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 5140747 - 5140672
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagtt 258  Q
    |||| ||||||||||||||||| ||||||  | |||||   |||||||| ||||| |||||||||||||| |||||    
T  5140747 aaataatcgttaaattataaatatttaaaacaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagtt 5140672  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 5204695 - 5204618
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||| ||||| ||||||| | |||||    ||||||| ||||| |||||||||||||| |||||||    
T  5204695 aaataatcgttaaattgtaaatatttaaagcaggagtaccgatacacctcaatttgtgaggtgtaccgtagaagttcc 5204618  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 9499731 - 9499799
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||||||| |||| |||||||||| | ||| | ||||||  |||||||| ||||||||||||||||||||    
T  9499731 aaatgatccttaatttataaatttatgaagca-gagtatcggtacacctcaatttatgaggtgtaccgta 9499799  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 14967560 - 14967636
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||| ||||| |||||||||||| |||||||||||    |||||||||||||   |||||||||||| |||||||    
T  14967560 aaatgatagttaatttataaatttttgaagtaagagtaccgatacaccttaattt-gcaggtgtaccgtagaagttcc 14967636  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 29744231 - 29744307
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||| ||||| |||||||||||| ||| || ||||   |||||| ||||||| ||| ||||||||||||||||||    
T  29744231 aaatgatagttaatttataaatttttgaagcaaaagtaccggtacactttaatttgtga-gtgtaccgtataagttcc 29744307  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 36410236 - 36410304
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgta 252  Q
    |||||||| |||| |||||||||| ||||| | ||||||  |||||||||||| | ||||||||||||||    
T  36410236 aaatgatcattaatttataaatttataaagca-gagtatcggtacaccttaatatgtgaggtgtaccgta 36410304  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 39939111 - 39939034
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||| ||||| ||| ||| | |||||   |||||||| ||||| |||||||||||||| |||||||    
T  39939111 aaataatcgttaaattgtaaatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcc 39939034  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 39979672 - 39979749
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||||||| |||| |||||||||| | ||| |  |||||  |||||||| ||||| |||||||||||||| |||||||    
T  39979672 aaatgatcattaatttataaatttatgaagcagaagtatcggtacacctcaatttgtgaggtgtaccgtagaagttcc 39979749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 40563192 - 40563116
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||||||||| ||||||| || | ||| ||||||||  |||||||| | ||||||| |||||||||| |||||||    
T  40563192 aaatgatcgttaatttataaaattatgaagcaagagtatcggtacacctcattttatga-gtgtaccgtagaagttcc 40563116  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 52776527 - 52776453
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||| ||||||||||||||||||||| || || |||||   |||||||| |||||||||||||||||||| ||||    
T  52776527 aaataatcgttaaattataaatttttgaaatatgagtaccggtacacctcaatttatgaggtgtaccgtagaagt 52776453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 15298289 - 15298216
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagt 257  Q
    |||| |||||||||||||||||||| || |||||||||   |||||||| |||||||||||||||| ||| ||||    
T  15298289 aaataatcgttaaattataaattttgaa-gtaagagtaccagtacacctcaatttatgaggtgtacagtagaagt 15298216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 29698400 - 29698323
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    |||| ||||||||||| ||||| ||||||| | |||||   |||||||| ||||| |||||||||||||| |||||||    
T  29698400 aaataatcgttaaattgtaaatatttaaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcc 29698323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 25480376 - 25480309
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccg 250  Q
    ||||||| ||||| |||||||||| | ||||||||||| | |||||||| ||||| | ||||||||||    
T  25480376 aaatgattgttaacttataaatttatgaagtaagagtactggtacacctcaatttgtaaggtgtaccg 25480309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 4393312 - 4393349
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagta 220  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  4393312 aaataatcgttaaattataaatttttgaagtaagagta 4393349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 27102672 - 27102635
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagta 220  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  27102672 aaatgatcattaaattataaatttttaaagtaggagta 27102635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 48795509 - 48795440
Alignment:
Q  191 gttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||| |||||||||| |  ||||||||||   |||||||| ||||| |||||||||||||| |||||||    
T  48795509 gttaatttataaatttatggagtaagagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcc 48795440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 49079805 - 49079842
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagta 220  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  49079805 aaataatcgttaaattataaatttttaaagtaggagta 49079842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 16989 - 17066
Alignment:
Q  183 aaatgatcgttaaattataaatttttaaagtaagagtatttgtacaccttaatttatgaggtgtaccgtataagttcc 260  Q
    ||||||||||||| | |||||||| | ||||| ||||||  |||||||| ||||| |||||||||||||| |||||||    
T  16989 aaatgatcgttaattgataaatttatgaagtaggagtatcggtacacctcaatttgtgaggtgtaccgtagaagttcc 17066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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