View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9360_low_50 (Length: 215)

Name: NF9360_low_50
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9360_low_50
NF9360_low_50
[»] chr3 (54 HSPs)
chr3 (20-202)||(3754593-3754775)
chr3 (20-196)||(4142016-4142186)
chr3 (20-196)||(4157823-4157996)
chr3 (124-195)||(2456249-2456320)
chr3 (131-196)||(968670-968735)
chr3 (117-202)||(989389-989474)
chr3 (130-202)||(2678385-2678457)
chr3 (139-202)||(803213-803276)
chr3 (136-202)||(1007454-1007520)
chr3 (136-202)||(1022482-1022548)
chr3 (127-196)||(1931137-1931206)
chr3 (139-196)||(2696727-2696784)
chr3 (146-195)||(13498224-13498273)
chr3 (131-202)||(2686299-2686373)
chr3 (120-192)||(9587161-9587233)
chr3 (146-197)||(9608346-9608397)
chr3 (148-202)||(997569-997623)
chr3 (148-202)||(1013959-1014013)
chr3 (133-195)||(2644351-2644413)
chr3 (133-195)||(2659141-2659203)
chr3 (146-195)||(771501-771550)
chr3 (127-196)||(1940562-1940631)
chr3 (129-202)||(3746001-3746074)
chr3 (139-195)||(2442039-2442095)
chr3 (146-194)||(2631358-2631406)
chr3 (146-193)||(2459277-2459324)
chr3 (120-195)||(7334215-7334290)
chr3 (146-196)||(1891066-1891116)
chr3 (130-196)||(7432040-7432106)
chr3 (118-195)||(956381-956458)
chr3 (146-195)||(7324433-7324482)
chr3 (146-195)||(37753347-37753396)
chr3 (146-195)||(43991960-43992009)
chr3 (136-196)||(1936972-1937032)
chr3 (127-195)||(2476634-2476702)
chr3 (127-195)||(7942485-7942553)
chr3 (120-195)||(783775-783850)
chr3 (133-195)||(2502148-2502210)
chr3 (141-195)||(12133097-12133151)
chr3 (135-185)||(44001605-44001655)
chr3 (146-195)||(754611-754660)
chr3 (146-187)||(1438003-1438044)
chr3 (146-195)||(9561987-9562036)
chr3 (128-193)||(23197014-23197079)
chr3 (146-194)||(2492083-2492131)
chr3 (146-189)||(7427607-7427650)
chr3 (146-189)||(12218033-12218076)
chr3 (127-189)||(13479584-13479646)
chr3 (146-183)||(746385-746422)
chr3 (146-195)||(7430538-7430587)
chr3 (149-194)||(7442982-7443027)
chr3 (146-195)||(9565831-9565880)
chr3 (152-185)||(37757744-37757777)
chr3 (146-194)||(768331-768379)
[»] chr5 (17 HSPs)
chr5 (20-196)||(11081812-11081988)
chr5 (136-196)||(23766854-23766914)
chr5 (136-196)||(23816702-23816762)
chr5 (127-196)||(23769629-23769698)
chr5 (127-196)||(23819477-23819546)
chr5 (146-195)||(20292995-20293044)
chr5 (132-196)||(23732166-23732230)
chr5 (146-196)||(3181716-3181766)
chr5 (146-195)||(20301443-20301492)
chr5 (146-195)||(20305856-20305905)
chr5 (146-195)||(20310260-20310309)
chr5 (127-196)||(23861009-23861078)
chr5 (130-202)||(1427679-1427751)
chr5 (148-196)||(41973474-41973522)
chr5 (127-196)||(23764243-23764312)
chr5 (127-196)||(23814076-23814145)
chr5 (146-195)||(6401768-6401817)
[»] scaffold0044 (1 HSPs)
scaffold0044 (127-197)||(89141-89211)
[»] chr7 (4 HSPs)
chr7 (127-197)||(39298975-39299045)
chr7 (118-195)||(1078134-1078211)
chr7 (146-196)||(1421171-1421221)
chr7 (146-191)||(3927063-3927108)
[»] chr4 (5 HSPs)
chr4 (127-192)||(22672110-22672175)
chr4 (118-196)||(20019746-20019824)
chr4 (146-195)||(11032910-11032959)
chr4 (139-183)||(20016180-20016224)
chr4 (134-185)||(55419792-55419843)
[»] chr1 (9 HSPs)
chr1 (127-196)||(51381438-51381507)
chr1 (145-197)||(23896138-23896190)
chr1 (146-195)||(24629213-24629262)
chr1 (153-196)||(24246506-24246549)
chr1 (146-197)||(25478863-25478914)
chr1 (146-196)||(24242859-24242909)
chr1 (146-196)||(51782798-51782848)
chr1 (146-196)||(51858605-51858655)
chr1 (156-196)||(24634817-24634857)
[»] chr8 (1 HSPs)
chr8 (128-202)||(19727874-19727948)
[»] chr2 (10 HSPs)
chr2 (146-195)||(36577366-36577415)
chr2 (150-195)||(33026657-33026702)
chr2 (120-195)||(7160730-7160805)
chr2 (121-192)||(7168667-7168738)
chr2 (150-197)||(33038158-33038205)
chr2 (121-195)||(7156169-7156243)
chr2 (141-185)||(6538844-6538888)
chr2 (127-195)||(7174356-7174424)
chr2 (150-194)||(33020314-33020358)
chr2 (146-195)||(34570471-34570520)
[»] scaffold0015 (2 HSPs)
scaffold0015 (146-197)||(32331-32382)
scaffold0015 (146-196)||(40383-40433)
[»] scaffold0200 (1 HSPs)
scaffold0200 (148-196)||(782-830)
[»] chr6 (12 HSPs)
chr6 (136-192)||(370777-370833)
chr6 (146-194)||(24417488-24417536)
chr6 (134-189)||(1442098-1442153)
chr6 (146-193)||(19119065-19119112)
chr6 (146-193)||(19126359-19126406)
chr6 (145-191)||(9819830-9819876)
chr6 (134-184)||(176345-176395)
chr6 (141-191)||(7564748-7564798)
chr6 (145-191)||(9825516-9825562)
chr6 (146-191)||(1459543-1459588)
chr6 (146-191)||(1470925-1470970)
chr6 (146-191)||(9703888-9703933)
[»] scaffold1004 (1 HSPs)
scaffold1004 (147-194)||(2144-2191)
[»] scaffold0760 (1 HSPs)
scaffold0760 (147-194)||(4639-4686)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 54)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 3754775 - 3754593
Alignment:
Q  20 taaagaaccaaattcaagtcaatatcattcataaacttcagcaacacttgatcatcctcaaaagtatacaatgccttcgcaaaggccttaggtttagaag 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||    
T  3754775 taaagaaccaaattcaagtcaatatcattcataaacttcagcaacacttgatcatcctcaaaagtatacaatgccttcgcaaagacctcgggtttagaag 3754676  T
Q  120 gatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 202  Q
    ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754675 gatctctcatgcaaggaatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 3754593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 4142016 - 4142186
Alignment:
Q  20 taaagaaccaaattcaagtcaatatcattcataaacttcagcaacacttgatcatcctcaaaagtatacaatgccttcgcaaaggccttaggtttagaag 119  Q
    ||||||| |||||||||||||| |||||      |||||||||||||||||||||||||||||  ||| | |||| | |||  | |||||||||||||||    
T  4142016 taaagaatcaaattcaagtcaaaatcat------acttcagcaacacttgatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaag 4142109  T
Q  120 gatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4142110 gatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatca 4142186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 4157823 - 4157996
Alignment:
Q  20 taaagaaccaaattcaagtcaatatcattcataaacttcagcaacacttgatcatcctcaaaagtatacaatgccttcgcaaaggccttaggtttagaag 119  Q
    ||||| |||||||||||||||  ||||| ||   ||| |||||||||||||||||||||||||  ||| | |||||| ||||| ||||||  ||||||||    
T  4157823 taaaggaccaaattcaagtcagaatcataca---actccagcaacacttgatcatcctcaaaaacatatattgccttggcaaaagccttaaatttagaag 4157919  T
Q  120 gatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    ||| |||| ||||||  |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4157920 gatgtctcttgtaagagatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatca 4157996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 2456320 - 2456249
Alignment:
Q  124 tctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||||||||||||||  | | |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2456320 tctcatgtaaggaatatggtacaatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 968735 - 968670
Alignment:
Q  131 taaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||| ||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  968735 taagaaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatca 968670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 989474 - 989389
Alignment:
Q  117 aaggatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 202  Q
    ||||||||  |||||||| ||||||||| |||||||||||||||||||||||||| || || ||||| |||||||||||| |||||    
T  989474 aaggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcacca 989389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 2678385 - 2678457
Alignment:
Q  130 gtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 202  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||  |||||||||||||||||| |||||    
T  2678385 gtaaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcacca 2678457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 803213 - 803276
Alignment:
Q  139 agtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 202  Q
    |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  803213 agtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcacca 803276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 1007520 - 1007454
Alignment:
Q  136 aatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 202  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||||    
T  1007520 aatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcatcacca 1007454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 1022548 - 1022482
Alignment:
Q  136 aatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 202  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||||    
T  1022548 aatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcatcacca 1022482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 1931137 - 1931206
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||||||| ||||||||| ||||||||||| || ||||||||||||| |||| |||||||||||||||||    
T  1931137 catgtaagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatca 1931206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 2696727 - 2696784
Alignment:
Q  139 agtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatca 2696784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 2686299 - 2686373
Alignment:
Q  131 taaggaatagtgaaaaatttagtccaagactctttatttccatattccttc---ataacccaaacatcaacacca 202  Q
    |||||||||||||| |||||| ||||||||||||| |||||||||||||||   ||||||||||||||| |||||    
T  2686299 taaggaatagtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcacca 2686373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 9587161 - 9587233
Alignment:
Q  120 gatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaac 192  Q
    |||||| ||||||||||||| || | ||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  9587161 gatctcccatgtaaggaatattgtacaattttgtccaaggctctttatttccatattccttcataatccaaac 9587233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 9608346 - 9608397
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatcaa 197  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatcaa 9608397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 997623 - 997569
Alignment:
Q  148 tttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 202  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| || |||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaacaacatcacca 997569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 1014013 - 1013959
Alignment:
Q  148 tttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 202  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| || |||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaacaacatcacca 1013959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 2644351 - 2644413
Alignment:
Q  133 aggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||||||| | ||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  2644351 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2644413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 2659141 - 2659203
Alignment:
Q  133 aggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||||||| | ||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  2659141 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2659203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 771501 - 771550
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  771501 aatttagtccaagagtctgtatttccatattccttcataacccaaacatc 771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 1940562 - 1940631
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||| ||| ||||||||| ||||||||||| || |||| |||||||| ||||||||||||||||||||||    
T  1940562 catgcaagaaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatca 1940631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 3746074 - 3746001
Alignment:
Q  129 tgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 202  Q
    ||||||||||||| || |||||||||||||||||||  ||| ||||||||||||||| ||||| |||| |||||    
T  3746074 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcacca 3746001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 2442095 - 2442039
Alignment:
Q  139 agtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  2442095 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 2631406 - 2631358
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacat 194  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  2631406 aatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 2459324 - 2459277
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaaca 193  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  2459324 aattttgtccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 7334215 - 7334290
Alignment:
Q  120 gatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||| ||| || |||||||||| | |||||||||||||||||||||||||| || |||||||| | |||||||||    
T  7334215 gatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatc 7334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 1891066 - 1891116
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  1891066 aatttagtccaagagtctttatttccatgttccttcataatccaaacatca 1891116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 7432040 - 7432106
Alignment:
Q  130 gtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    ||||| ||| ||||| ||||||||||| || ||||||||||||||||||||||||  ||||||||||    
T  7432040 gtaagaaatggtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatca 7432106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 956458 - 956381
Alignment:
Q  118 aggatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||||  ||||| || |||| |||| ||||||  |||||||||||| ||||||||||||||||||| |||||||||    
T  956458 aggatcttgcatgtgagaaataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatc 956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 7324433 - 7324482
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||||||||||||||||||||||| || |||||||||| |||||||||    
T  7324433 aatttagtccaagactctttatttccgtagtccttcataatccaaacatc 7324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 37753347 - 37753396
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  37753347 aatttagtccaagactctttctttccatattcctccataatccaaacatc 37753396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 43992009 - 43991960
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  43992009 aatttggtccaagactctatatttccatattccttcataatccaaacatc 43991960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 1936972 - 1937032
Alignment:
Q  136 aatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    ||||||||| ||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  1936972 aatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatca 1937032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 2476702 - 2476634
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||| ||||| |||| | ||||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  2476702 catgttaggaacagtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 2476634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 7942553 - 7942485
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||||||||| | || | |||||| |||||||||||||||| ||||| |||||||||| |||||||||    
T  7942553 catgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 783775 - 783850
Alignment:
Q  120 gatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||| ||||||||||| |||  | ||||||||||| | || | ||||||||||||||||||||| |||||||||    
T  783775 gatctcccatgtaaggaacagtatacaatttagtccatggctttgtatttccatattccttcataatccaaacatc 783850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 2502210 - 2502148
Alignment:
Q  133 aggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||||||| | | |||||||||| |||| ||||||||||| |||||||||| |||||||||    
T  2502210 aggaatagtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacatc 2502148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 12133151 - 12133097
Alignment:
Q  141 tgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||| ||||||||||| |||||| |||||||||| ||| ||||||||||||||||    
T  12133151 tgaacaatttagtccacgactctctatttccatactccctcataacccaaacatc 12133097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 44001655 - 44001605
Alignment:
Q  135 gaatagtgaaaaatttagtccaagactctttatttccatattccttcataa 185  Q
    |||||||| | | ||||||||||||||||||| ||||||||||||||||||    
T  44001655 gaatagtgtacagtttagtccaagactctttaattccatattccttcataa 44001605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 754611 - 754660
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||||||||||||||||| || |||||| |||||||||| |||||||||    
T  754611 aatttagtccaagactcttgatctccatactccttcataatccaaacatc 754660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 1438044 - 1438003
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacc 187  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  1438044 aatttaatccaagagtctttatttccatattccttcataacc 1438003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 9561987 - 9562036
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||||||||||||||||| ||||||||| || ||||||| |||||||||    
T  9561987 aatttagtccaagactcttgatttccatactcattcataatccaaacatc 9562036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 23197079 - 23197014
Alignment:
Q  128 atgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaaca 193  Q
    ||||||||||||   || |||||||||||||| |||| |||||||||||||||||| | |||||||    
T  23197079 atgtaaggaatacgaaacaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 2492131 - 2492083
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacat 194  Q
    ||||||||||||||||||  ||||||||| |||||||||| ||||||||    
T  2492131 aatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 7427607 - 7427650
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataaccca 189  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  7427607 aatttagcccacgactctttatttccatattccatcataaccca 7427650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 12218076 - 12218033
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataaccca 189  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  12218076 aatttagcccacgactctttatttccatattccatcataaccca 12218033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 13479646 - 13479584
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataaccca 189  Q
    ||||| || ||||||||| ||||| ||||||||||||| | |||||||||| ||||| |||||    
T  13479646 catgttagaaatagtgaacaattttgtccaagactcttgaattccatattctttcatgaccca 13479584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 746385 - 746422
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcat 183  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  746385 aatttagtccaagactcttgatttccatactccttcat 746422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 7430538 - 7430587
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||||||| |||||| |||||||||||| | |||||||| |||||||||    
T  7430538 aatttagtctaagactttttatttccatacttcttcataatccaaacatc 7430587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 7442982 - 7443027
Alignment:
Q  149 ttagtccaagactctttatttccatattccttcataacccaaacat 194  Q
    |||||||||||||||| ||||||||| |||||||| | ||||||||    
T  7442982 ttagtccaagactcttgatttccatactccttcatgatccaaacat 7443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 9565831 - 9565880
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||||||||||||||||| || ||| || |||||||||| |||||||||    
T  9565831 aatttagtccaagactcttgatctccgtactccttcataatccaaacatc 9565880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 37757744 - 37757777
Alignment:
Q  152 gtccaagactctttatttccatattccttcataa 185  Q
    |||||||||||||| |||||||||||||||||||    
T  37757744 gtccaagactctttgtttccatattccttcataa 37757777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 768331 - 768379
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacat 194  Q
    ||||||||||||||||||| |||||| || || ||||||| ||||||||    
T  768331 aatttagtccaagactcttcatttccgtactcattcataatccaaacat 768379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 11081988 - 11081812
Alignment:
Q  20 taaagaaccaaattcaagtcaatatcattcataaacttcagcaacacttgatcatcctcaaaagtatacaatgccttcgcaaaggccttaggtttagaag 119  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||  |||| | |||||| | |||| | | | |||||||||    
T  11081988 taaagaatcaaattcaagtcaaaatcattcataaacttcaacaacacttgatcatcctcaaatatatatactgccttgggaaagacatcacgtttagaag 11081889  T
Q  120 gatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11081888 gatctctcatgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatca 11081812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 23766854 - 23766914
Alignment:
Q  136 aatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  23766854 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatca 23766914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 23816702 - 23816762
Alignment:
Q  136 aatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  23816702 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatca 23816762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 23769629 - 23769698
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||| |||| |||||||| ||||||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  23769629 catgaaaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatca 23769698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 23819477 - 23819546
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||| |||| |||||||| ||||||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  23819477 catgaaaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatca 23819546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 20293044 - 20292995
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 23732230 - 23732166
Alignment:
Q  132 aaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    ||||||||||||| | |||| |||||||| ||||||| |||||||||||||||| ||||||||||    
T  23732230 aaggaatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatca 23732166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 3181766 - 3181716
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||||||||    
T  3181766 aatttaatccaagactcttcatttccatattccttcataagccaaacatca 3181716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 20301492 - 20301443
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||||||||||||||||||| || ||||||||||||||| |||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatc 20301443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 20305905 - 20305856
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  20305905 aatttagtccaagactctttaattccatattccttcataatccagacatc 20305856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 20310309 - 20310260
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  20310309 aatttagtccaagactctttaattccatattccttcataatccagacatc 20310260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 23861009 - 23861078
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||| ||||||||||||| ||||||||||||||| ||||  | |||||||||||||| | ||||||||||    
T  23861009 catgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatca 23861078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 1427679 - 1427751
Alignment:
Q  130 gtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 202  Q
    ||||| ||| ||||| | |||| ||||||||||| |||||||||| || |||||||||||||||||| |||||    
T  1427679 gtaagaaattgtgaacagtttaatccaagactctgtatttccatactctttcataacccaaacatcatcacca 1427751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 41973474 - 41973522
Alignment:
Q  148 tttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  41973474 tttagtccatgacactttattttcatattccttcataacccaaacatca 41973522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 23764243 - 23764312
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||| ||||||||||||| ||| ||||||||||| ||||  | |||||||||||||| | ||||||||||    
T  23764243 catgaaaggaatagtgaacaatgtagtccaagacgctttcatcccatattccttcattatccaaacatca 23764312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 23814076 - 23814145
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||| ||||||||||||| ||||||||||||||| || |  | |||||||||||||| | ||||||||||    
T  23814076 catgaaaggaatagtgaacaatttagtccaagacgctgtcatcccatattccttcattatccaaacatca 23814145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 6401768 - 6401817
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||||||||| |||||| ||||| || |||||||||||| |||||||||    
T  6401768 aatttagtccatgactctctattttcaaattccttcataagccaaacatc 6401817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 89211 - 89141
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaa 197  Q
    ||||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  89211 catgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaa 89141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 39299045 - 39298975
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaa 197  Q
    ||||||||||| | || ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  39299045 catgtaaggaacactgtaaaatttagtccaggactctttatttccacattccttcaaaacccaaacatcaa 39298975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 1078134 - 1078211
Alignment:
Q  118 aggatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||||| | |||||| || | |||| ||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  1078134 aggatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatc 1078211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 1421171 - 1421221
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  1421171 aatttaatccaagactctttatttccgtattccttcataagccaaacatca 1421221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 3927108 - 3927063
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaa 191  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||    
T  3927108 aatttagtccaagaatttttatttccataatccttcataacccaaa 3927063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 22672110 - 22672175
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaac 192  Q
    |||||||| ||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||    
T  22672110 catgtaagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaac 22672175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 20019746 - 20019824
Alignment:
Q  118 aggatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||||||  ||||| || || |||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||    
T  20019746 aggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 20019824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 11032959 - 11032910
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||| ||||||||||||||||||| ||||||||||| | |||||||||    
T  11032959 aatttaatccaagactctttatttccgtattccttcatgagccaaacatc 11032910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 20016180 - 20016224
Alignment:
Q  139 agtgaaaaatttagtccaagactctttatttccatattccttcat 183  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||    
T  20016180 agtgaacaatttagtccaagactcttgaattccatattccttcat 20016224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 55419843 - 55419792
Alignment:
Q  134 ggaatagtgaaaaatttagtccaagactctttatttccatattccttcataa 185  Q
    |||||||| || |||||||||||||| ||||||||||||||  |||||||||    
T  55419843 ggaatagtaaacaatttagtccaagaatctttatttccataaaccttcataa 55419792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 51381438 - 51381507
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||| ||||| ||||    
T  51381438 catgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 23896138 - 23896190
Alignment:
Q  145 aaatttagtccaagactctttatttccatattccttcataacccaaacatcaa 197  Q
    |||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  23896138 aaatttaacccaagactctttatttccatattccttcataagccaaacatcaa 23896190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 24629213 - 24629262
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacatc 24629262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 24246506 - 24246549
Alignment:
Q  153 tccaagactctttatttccatattccttcataacccaaacatca 196  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||    
T  24246506 tccaagactctttatttccgtattctttcataagccaaacatca 24246549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 25478914 - 25478863
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatcaa 197  Q
    |||||| ||||||| |||||||| || ||||||||||||| |||||||||||    
T  25478914 aatttaatccaagattctttattaccgtattccttcataagccaaacatcaa 25478863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 24242859 - 24242909
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||||| ||||||||||||||||||| |||  |||||||| ||||||||||    
T  24242859 aatttaatccaagactctttatttccgtatatcttcataagccaaacatca 24242909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 51782848 - 51782798
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||||| ||||||| | || |||||||||||||||||||| ||||||||||    
T  51782848 aatttattccaagattgttcatttccatattccttcataatccaaacatca 51782798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 51858655 - 51858605
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||||||||||||| |||  |||||||||||||||||| | ||||||||||    
T  51858655 aatttagtccaagattctacatttccatattccttcatgatccaaacatca 51858605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 24634817 - 24634857
Alignment:
Q  156 aagactctttatttccatattccttcataacccaaacatca 196  Q
    ||||||||||| |||| ||||||||||||| ||||||||||    
T  24634817 aagactctttaattccgtattccttcataagccaaacatca 24634857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 19727948 - 19727874
Alignment:
Q  128 atgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca 202  Q
    ||||||| ||||||||| | ||||||||| |||||||||||| |||||||  ||||||||||||||||| |||||    
T  19727948 atgtaagaaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcatcacca 19727874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 36577415 - 36577366
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  36577415 aatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 33026702 - 33026657
Alignment:
Q  150 tagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||    
T  33026702 tagtccaagactttttatttccatattgcttcataacccaaacatc 33026657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 7160730 - 7160805
Alignment:
Q  120 gatctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||| |||||| ||||| |  ||| |||||||||||||| || ||||||||||| |||||||||| |||||||||    
T  7160730 gatctttcatgtgaggaagacggaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 7168667 - 7168738
Alignment:
Q  121 atctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaac 192  Q
    ||||| |||||||||||    ||| |||||||||||||| || |||||||||||||||||||||| ||||||    
T  7168667 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 7168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 33038205 - 33038158
Alignment:
Q  150 tagtccaagactctttatttccatattccttcataacccaaacatcaa 197  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  33038205 tagtccaagactttttgtttccatattccttcataatccaaacatcaa 33038158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 7156169 - 7156243
Alignment:
Q  121 atctctcatgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||| ||||||||||| |  ||| ||||||| |||||| |||| ||||||||| |||||||||| |||||||||    
T  7156169 atctcccatgtaaggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 6538888 - 6538844
Alignment:
Q  141 tgaaaaatttagtccaagactctttatttccatattccttcataa 185  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||    
T  6538888 tgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 7174356 - 7174424
Alignment:
Q  127 catgtaaggaatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||||||||| |  ||| ||| |||||||||| |||| |||||||||||||||||||| ||| |||||    
T  7174356 catgtaaggaacacggaacaatctagtccaagaatcttgatttccatattccttcataagccagacatc 7174424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 33020358 - 33020314
Alignment:
Q  150 tagtccaagactctttatttccatattccttcataacccaaacat 194  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||    
T  33020358 tagtccaagactttttatttccatattccttcataatccacacat 33020314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 34570471 - 34570520
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatc 195  Q
    ||||||||  || ||| ||||||||||||||||| |||||||||||||||    
T  34570471 aatttagttgaatactttttatttccatattcctccataacccaaacatc 34570520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 32331 - 32382
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatcaa 197  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||||||||    
T  32331 aatttaatccaagagtctttatttccatattccttcataagccaaacatcaa 32382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 40383 - 40433
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    |||||| ||||||| ||||||||| ||||||||||||||| ||||||||||    
T  40383 aatttaatccaagagtctttattttcatattccttcataagccaaacatca 40433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 782 - 830
Alignment:
Q  148 tttagtccaagactctttatttccatattccttcataacccaaacatca 196  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  782 tttagtccatgacactttattttcatattccttcataacccaaacatca 830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 370777 - 370833
Alignment:
Q  136 aatagtgaaaaatttagtccaagactctttatttccatattccttcataacccaaac 192  Q
    |||| |||| |||||||||||||| |||||||||||||| | |||||||||||||||    
T  370777 aatattgaacaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 24417488 - 24417536
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaacat 194  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  24417488 aatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 1442098 - 1442153
Alignment:
Q  134 ggaatagtgaaaaatttagtccaagactctttatttccatattccttcataaccca 189  Q
    |||| |||||| |||||||||||||| |||||| ||||||| ||||||||||||||    
T  1442098 ggaacagtgaacaatttagtccaagaatctttaattccataatccttcataaccca 1442153  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 19119112 - 19119065
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaaca 193  Q
    ||||||||||||||||||| |||||||||||||||||| | |||||||    
T  19119112 aatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 19126406 - 19126359
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaaca 193  Q
    ||||||||||||||||||| |||||||||||||||||| | |||||||    
T  19126406 aatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 9819830 - 9819876
Alignment:
Q  145 aaatttagtccaagactctttatttccatattccttcataacccaaa 191  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  9819830 aaatttagtccaagagtctctatttccatattccttcataagccaaa 9819876  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 176395 - 176345
Alignment:
Q  134 ggaatagtgaaaaatttagtccaagactctttatttccatattccttcata 184  Q
    |||| |||||| |||||||||||||| |||||||||||||| || ||||||    
T  176395 ggaagagtgaacaatttagtccaagaatctttatttccataatcattcata 176345  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 7564748 - 7564798
Alignment:
Q  141 tgaaaaatttagtccaagactctttatttccatattccttcataacccaaa 191  Q
    |||| |||||||||||||| || || |||||||| ||||||||||||||||    
T  7564748 tgaacaatttagtccaagaatccttgtttccataatccttcataacccaaa 7564798  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 9825516 - 9825562
Alignment:
Q  145 aaatttagtccaagactctttatttccatattccttcataacccaaa 191  Q
    ||||||||||||||| | | ||||||||||||||||||||| |||||    
T  9825516 aaatttagtccaagagtttctatttccatattccttcataagccaaa 9825562  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 1459543 - 1459588
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaa 191  Q
    |||||||||||||| |||||||||||| | || |||||||||||||    
T  1459543 aatttagtccaagattctttatttccaaaatctttcataacccaaa 1459588  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 1470925 - 1470970
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaa 191  Q
    ||||||| |||||| |||||||||||||| || |||||||||||||    
T  1470925 aatttagaccaagaatctttatttccataatctttcataacccaaa 1470970  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 9703888 - 9703933
Alignment:
Q  146 aatttagtccaagactctttatttccatattccttcataacccaaa 191  Q
    |||||||||||| | ||| ||||||||||||||||||||| |||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaa 9703933  T

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Target: scaffold1004 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 2191 - 2144
Alignment:
Q  147 atttagtccaagactctttatttccatattccttcataacccaaacat 194  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||||    
T  2191 atttagtccaagactctacatttccatattccttcatagcccaaacat 2144  T

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Target: scaffold0760 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 4686 - 4639
Alignment:
Q  147 atttagtccaagactctttatttccatattccttcataacccaaacat 194  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||||    
T  4686 atttagtccaagactctacatttccatattccttcatagcccaaacat 4639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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