View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9360_low_53 (Length: 208)
Name: NF9360_low_53
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 2700763 - 2700948
Alignment:
| Q |
16 |
gatacagtgaaggaaccaccgtttccattgatgggtttgtttctgtttgcaacccaaataacttcgggtccaggaatgttgtagtaccaaataccaacgt |
115 |
Q |
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| T |
2700763 |
gatacagtgaaggaaccaccgtttccattgatgggtttgtttctgtttgcaacccaaataacttcgggtccaggaatgttgtagtaccaaataccaacgt |
2700862 |
T |
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| Q |
116 |
aacgtgaagaagaattttcaaacccaaagaaacccatcacgaagttgtagccatctgagactaaaacttcaccttctttgtctctg |
201 |
Q |
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| T |
2700863 |
aacgtgaagaagaattttcaaacccaaagaaacccatcacgaagttgtagccatctgagactaaaacttcaccttctttgtctctg |
2700948 |
T |
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Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 2693073 - 2693246
Alignment:
| Q |
28 |
gaaccaccgtttccattgatgggtttgtttctgtttgcaacccaaataacttcgggtccaggaatgttgtagtaccaaataccaacgtaacgtgaagaag |
127 |
Q |
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| T |
2693073 |
gaaccaccattgccattgatgggtgtgtttctgtttgcaacccaaataacttctggaccaggaatgttgtagtaccaaattccaacataacgagaagaag |
2693172 |
T |
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| Q |
128 |
aattttcaaacccaaagaaacccatcacgaagttgtagccatctgagactaaaacttcaccttctttgtctctg |
201 |
Q |
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| T |
2693173 |
agtcttgaaaaccaaagaaacccattacgaagttgtgcccatctgagaataaaacttcaccatcttcgtctctg |
2693246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 14522140 - 14522315
Alignment:
| Q |
18 |
tacagtgaaggaaccaccgtttccattgatgggtttgtttctgtttgcaacccaaataacttcgggtccaggaatgttgtagtaccaaataccaacgtaa |
117 |
Q |
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| T |
14522140 |
tacagtgaaagaaccacggttgccatttatgggtgtgtttctatttgcaacccaaataatctgcggtccaggtatgttatagtaccaaataccgacataa |
14522239 |
T |
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| Q |
118 |
cgtgaagaagaattttcaaacccaaagaaacccatcacgaagttgtagccatctgagactaaaacttcaccttctt |
193 |
Q |
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| T |
14522240 |
cgagaagaagagttgccgaaaccaaagaaacccatagcaaagttgaaaccatctgagaataaaacatcaccttctt |
14522315 |
T |
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