View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9360_low_7 (Length: 494)
Name: NF9360_low_7
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 37068712 - 37069047
Alignment:
| Q |
11 |
cagagacaagggttaagacacattttgctaggccaaattggcgtaatgtctataaacatgttgctcttaaacaccctgnnnnnnn-gttggtaagtatgg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37068712 |
cagagacaagggttaagacacattttgctaggccaaattggcgtaatgtctataaacatgttgctcttaaacaccctgaaaaaaaagttggtaagtatgg |
37068811 |
T |
|
| Q |
110 |
atttatctcttaattagtttggttgatgaaatttaagttaacatattttttagcaaatttataatataacatacattatgttcttaggtgttttttactg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37068812 |
atttatctcttaattagtttggttgatgaaatttaagttaacatattttttagcaaatttataatataacatacattatgttcttaggtgttttttactg |
37068911 |
T |
|
| Q |
210 |
tggagcacatggattggttggcgaactaagaaagctttctttggacttttcaagaaaaactggcaccaagtttgattttcataaagagaatttttagatt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37068912 |
tggagcacatggattggttggcgaactaagaaagctttctttggacttttcaagaaaaactggcaccaagtttgattttcataaagagaatttttagatt |
37069011 |
T |
|
| Q |
310 |
ctttttgacgtagttcttttttgcccgtaatacatc |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37069012 |
ctttttgacgtagttcttttttgcccgtaatacatc |
37069047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 37069108 - 37069158
Alignment:
| Q |
404 |
ctagctccatttgatggatggagttgtaaacatgtatgatcggaaggaata |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37069108 |
ctagctccatttgatggatggagttgtaaacatgtatgatcggaaggaata |
37069158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 46560055 - 46559936
Alignment:
| Q |
195 |
aggtgttttttactgtggagcacatggattggttggcgaactaagaaagctttctttggacttttcaagaaaaactggcaccaagtttgattttcataaa |
294 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| |||| | || |||||| |||| |||||||| ||||| ||| || ||||| ||||||||| |
|
|
| T |
46560055 |
aggtgttttttactgtggggcggctggattggttggacaacttaaaagtctttctctggatttttcaaggaaaaccaacactaaatttgagtttcataaa |
46559956 |
T |
|
| Q |
295 |
gagaatttttagattctttt |
314 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
46559955 |
gagaatttttagattctttt |
46559936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 46560302 - 46560229
Alignment:
| Q |
15 |
gacaagggttaagacacattttgctaggccaaattggcgtaatgtctataaacatgttgctcttaaacaccctg |
88 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||| ||| | ||||||| |||||| ||||| |||| |
|
|
| T |
46560302 |
gacaagggttaaaacacattttgctagaccaaattggcgtactgtgtttaaacatactgctctcaaacatcctg |
46560229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University