View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9360_low_8 (Length: 461)

Name: NF9360_low_8
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9360_low_8
NF9360_low_8
[»] chr5 (21 HSPs)
chr5 (17-433)||(14820297-14820688)
chr5 (145-315)||(19343551-19343721)
chr5 (145-294)||(39058477-39058626)
chr5 (145-315)||(26724110-26724281)
chr5 (167-295)||(38948544-38948672)
chr5 (145-306)||(5159485-5159646)
chr5 (138-315)||(36235746-36235923)
chr5 (155-315)||(16089694-16089854)
chr5 (138-196)||(5459043-5459101)
chr5 (228-304)||(15070000-15070076)
chr5 (145-273)||(38607295-38607423)
chr5 (145-244)||(21114568-21114667)
chr5 (235-310)||(30403572-30403647)
chr5 (261-315)||(6502282-6502336)
chr5 (145-211)||(15069930-15069996)
chr5 (197-297)||(22860975-22861072)
chr5 (167-208)||(4294818-4294859)
chr5 (186-315)||(5459137-5459265)
chr5 (145-198)||(16089653-16089706)
chr5 (145-201)||(1298894-1298950)
chr5 (350-378)||(15070125-15070153)
[»] chr8 (24 HSPs)
chr8 (145-304)||(39344582-39344741)
chr8 (145-315)||(12596853-12597023)
chr8 (145-304)||(24916049-24916206)
chr8 (145-290)||(26938628-26938773)
chr8 (145-304)||(26938876-26939032)
chr8 (193-315)||(32796980-32797102)
chr8 (167-315)||(10467482-10467631)
chr8 (145-293)||(33038214-33038362)
chr8 (145-315)||(42023985-42024154)
chr8 (145-308)||(17156980-17157146)
chr8 (145-260)||(17153537-17153652)
chr8 (145-304)||(17219713-17219875)
chr8 (145-296)||(24292198-24292349)
chr8 (147-251)||(16483745-16483848)
chr8 (145-265)||(8026016-8026136)
chr8 (145-201)||(8026216-8026272)
chr8 (176-251)||(30743922-30743997)
chr8 (185-231)||(2414910-2414956)
chr8 (145-244)||(43651359-43651458)
chr8 (168-218)||(41828016-41828066)
chr8 (134-171)||(41590719-41590756)
chr8 (145-205)||(12911025-12911085)
chr8 (145-229)||(26736027-26736111)
chr8 (145-201)||(26938540-26938596)
[»] chr6 (17 HSPs)
chr6 (145-296)||(10516588-10516738)
chr6 (145-290)||(3807068-3807213)
chr6 (145-315)||(6197810-6197979)
chr6 (145-315)||(17957029-17957199)
chr6 (148-275)||(3336025-3336152)
chr6 (145-251)||(25042897-25043002)
chr6 (145-251)||(4405838-4405943)
chr6 (215-315)||(4254536-4254636)
chr6 (145-253)||(12611794-12611902)
chr6 (145-268)||(24672269-24672392)
chr6 (153-276)||(30465195-30465318)
chr6 (255-315)||(14198537-14198597)
chr6 (148-231)||(4409537-4409619)
chr6 (145-244)||(10311637-10311736)
chr6 (168-219)||(17141881-17141932)
chr6 (353-387)||(34187672-34187706)
chr6 (255-315)||(14897305-14897365)
[»] chr4 (18 HSPs)
chr4 (145-323)||(6449661-6449839)
chr4 (140-315)||(40390884-40391058)
chr4 (153-324)||(15025785-15025955)
chr4 (136-253)||(10573942-10574059)
chr4 (167-271)||(6156049-6156152)
chr4 (145-224)||(15882221-15882300)
chr4 (149-315)||(38377811-38377964)
chr4 (145-304)||(31049984-31050144)
chr4 (145-205)||(40391085-40391145)
chr4 (141-199)||(784192-784250)
chr4 (350-387)||(38377820-38377857)
chr4 (145-201)||(784000-784056)
chr4 (235-315)||(784088-784168)
chr4 (255-315)||(14806451-14806511)
chr4 (145-268)||(22593330-22593453)
chr4 (176-277)||(26081196-26081297)
chr4 (145-202)||(43914042-43914099)
chr4 (354-386)||(47472199-47472231)
[»] chr3 (16 HSPs)
chr3 (145-315)||(34359330-34359500)
chr3 (135-315)||(39340760-39340938)
chr3 (145-315)||(50334632-50334804)
chr3 (145-315)||(44446851-44447021)
chr3 (195-314)||(45743779-45743898)
chr3 (145-315)||(28769505-28769673)
chr3 (145-265)||(20336780-20336900)
chr3 (137-246)||(13899456-13899564)
chr3 (145-276)||(20314887-20315018)
chr3 (197-324)||(22853361-22853489)
chr3 (163-272)||(17268848-17268957)
chr3 (145-244)||(9766052-9766151)
chr3 (199-265)||(16876437-16876503)
chr3 (255-315)||(16607176-16607236)
chr3 (145-205)||(43545340-43545400)
chr3 (145-201)||(52423195-52423251)
[»] chr1 (15 HSPs)
chr1 (148-315)||(20985930-20986099)
chr1 (145-315)||(33752959-33753128)
chr1 (145-293)||(50919301-50919448)
chr1 (145-311)||(16545413-16545578)
chr1 (167-271)||(13392831-13392935)
chr1 (145-271)||(25506585-25506709)
chr1 (148-244)||(29307657-29307753)
chr1 (237-304)||(37470916-37470983)
chr1 (141-192)||(16545318-16545369)
chr1 (151-241)||(3891451-3891541)
chr1 (145-192)||(1236708-1236755)
chr1 (152-242)||(37471004-37471094)
chr1 (145-174)||(23278793-23278822)
chr1 (164-265)||(29102855-29102956)
chr1 (145-205)||(35218058-35218118)
[»] chr2 (23 HSPs)
chr2 (145-315)||(34904010-34904180)
chr2 (150-281)||(6191094-6191225)
chr2 (167-296)||(855586-855715)
chr2 (145-304)||(35954224-35954383)
chr2 (149-315)||(31994722-31994888)
chr2 (149-304)||(8794580-8794731)
chr2 (145-304)||(30641034-30641194)
chr2 (145-315)||(27694513-27694683)
chr2 (145-315)||(39293110-39293279)
chr2 (167-304)||(10077626-10077764)
chr2 (145-249)||(24490617-24490721)
chr2 (145-295)||(29242582-29242730)
chr2 (175-260)||(30632591-30632676)
chr2 (175-260)||(30669060-30669145)
chr2 (146-247)||(36773985-36774085)
chr2 (145-206)||(37284290-37284351)
chr2 (145-304)||(434530-434690)
chr2 (255-315)||(21595025-21595085)
chr2 (145-206)||(11711255-11711316)
chr2 (145-206)||(17448896-17448957)
chr2 (246-323)||(33912690-33912766)
chr2 (145-206)||(43910163-43910224)
chr2 (145-193)||(14201328-14201376)
[»] chr7 (14 HSPs)
chr7 (145-304)||(25067651-25067810)
chr7 (145-315)||(27567663-27567835)
chr7 (145-304)||(11297757-11297917)
chr7 (150-250)||(34471227-34471327)
chr7 (145-315)||(20132053-20132223)
chr7 (167-315)||(28098553-28098700)
chr7 (199-301)||(13009377-13009480)
chr7 (153-276)||(30851674-30851797)
chr7 (179-315)||(12925246-12925382)
chr7 (145-231)||(21367169-21367255)
chr7 (185-276)||(28565079-28565170)
chr7 (145-219)||(28555280-28555354)
chr7 (145-215)||(28545217-28545287)
chr7 (353-381)||(38487338-38487366)
[»] scaffold0720 (1 HSPs)
scaffold0720 (145-276)||(5503-5634)
[»] scaffold0020 (1 HSPs)
scaffold0020 (145-304)||(152180-152339)
[»] scaffold0233 (1 HSPs)
scaffold0233 (138-315)||(16922-17099)
[»] scaffold0005 (2 HSPs)
scaffold0005 (150-315)||(253745-253909)
scaffold0005 (255-315)||(33216-33276)
[»] scaffold0478 (2 HSPs)
scaffold0478 (145-260)||(8599-8714)
scaffold0478 (145-224)||(3221-3300)
[»] scaffold1911 (1 HSPs)
scaffold1911 (167-260)||(2-95)
[»] scaffold0264 (1 HSPs)
scaffold0264 (167-252)||(19788-19873)
[»] scaffold0002 (2 HSPs)
scaffold0002 (179-315)||(363071-363207)
scaffold0002 (255-315)||(360544-360604)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 433
Target Start/End: Complemental strand, 14820688 - 14820297
Alignment:
Q  17 aaatatttgtcttgtaatgcaattgatgatagatgtttgtatttgcattttgaaggtaaatcccgtttgtgtcaattaatagattttgatatctcaattg 116  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  14820688 aaatatttgtcttgtaatgcaattgatgatagatgtttctatttgcattttgaaggtaaatcccgtttgtgtcaattaatagattttgata--------- 14820598  T
Q  117 agatagattaatataattaataaaagggtaaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttt 216  Q
          |||||||        |||||| ||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||| |||    
T  14820597 ------attaata--------aaaagg-taaatatgtttttagttcctataaaatcataagttttcaagtttagtccttacaaaattttagtggtaattt 14820513  T
Q  217 tagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaat 316  Q
    || |||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||||    
T  14820512 taaccctctataataatgtagtttgtaaaaataatccatattttaaaaactttttataaaaaatggtcacttttagtccttcaaaatagtccttataaat 14820413  T
Q  317 ataaatagagaagaaaggtgannnnnnnnnngcagggactaaacttaaaaatttgtaattttgtaaggactnnnnnnntatttaactcttaataaaataa 416  Q
    |||||||||||||||||||||           || ||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||    
T  14820412 ataaatagagaagaaaggtgatttttttttt-catggactaaacttgaaaatttgtaattttgtaaggactaaaaaaatatttaactcttaataaaataa 14820314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 145 - 315
Target Start/End: Original strand, 19343551 - 19343721
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| |||||||| ||||||||| ||||||| |||||||||||||||| || |||||| |||  | |||| ||||||||||||    
T  19343551 taaatatgtttttagtacctacaaaatcatgagtttttaagtttagtctctataaaattttagtgataattttagtcctaaaaaatattgtagtttgtaa 19343650  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    |||||||||||||||||||||||||||||||| ||| || | |||||||||| |||| || ||||||||||    
T  19343651 aaatagttcatattttaaaaactttttacaaaaaatagataattttagtcctccaaactagtccttataaa 19343721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 145 - 294
Target Start/End: Complemental strand, 39058626 - 39058477
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||| | |||||||||||| |||||||||| ||||  ||||||||||||||| ||||| |||||| |||| |||| | ||||||||||||    
T  39058626 taaatatgtttttaatccctataaaatcacaagtttttaagtttaacccctataaaattttaatggtaattttagtcctccataacattgtagtttgtaa 39058527  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtc 294  Q
     |||||| | |||||| ||||||||||||||| |||||||||||||||||    
T  39058526 gaatagtccttattttgaaaactttttacaaacaatggacacttttagtc 39058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 145 - 315
Target Start/End: Original strand, 26724110 - 26724281
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| |||||||  ||||||  | ||||||||||||||||||||| ||||| |||||| | || |||  | |||| ||| |||    
T  26724110 taaatatgtttttagtccctacaaaatcacgagttttcgagtttagtccctataaaattttaatggtaattttagtcgtccatagaattgtaatttataa 26724209  T
Q  245 aaatagttcatattttaaaaactttttac-aaataatggacacttttagtccttcaaaataatccttataaa 315  Q
     || ||| | |||||| |||||||||||| ||| |||||| |||||||||||| ||||||| ||||||||||    
T  26724210 gaacagtccctattttgaaaactttttacaaaaaaatggatacttttagtcctccaaaatagtccttataaa 26724281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 38948544 - 38948672
Alignment:
Q  167 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 266  Q
    ||||||| ||||||| || |||||||  |||||||||||| || || |||||| |||  |||||   ||||||| ||| | |||||||||||||||||||    
T  38948544 aaaatcacaagttttcaaatttagtctatataaaattttaatgataattttagtccttcataatttagtagtttataagattagttcatattttaaaaac 38948643  T
Q  267 tttttacaaataatggacacttttagtcc 295  Q
    |||||||||| ||||||||||||||||||    
T  38948644 tttttacaaaaaatggacacttttagtcc 38948672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 145 - 306
Target Start/End: Complemental strand, 5159646 - 5159485
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||| ||||||||||| ||||  ||||||| ||||||||  ||||||| ||||||||||||| | ||| |||||  |||  | | || | |||||| |||    
T  5159646 taaaaatgtttttagtccctaccaaatcatgagtttttaggtttagtctctataaaattttaatagtaattttaatcctaaaaattattatagtttctaa 5159547  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataat 306  Q
    ||||||| | |||||||||||||||| ||||| |||||| |||| ||||||| |||||||||    
T  5159546 aaatagtccttattttaaaaacttttaacaaaaaatggatacttgtagtcctccaaaataat 5159485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 315
Target Start/End: Original strand, 36235746 - 36235923
Alignment:
Q  138 aaaagggtaaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtag 237  Q
    |||||| |||||||||| |||||   |  ||||| || |||||| || |||| | ||||||||||||||  |||| ||||||||||| |||||| | |||    
T  36235746 aaaaggttaaatatgttcttagtctatgcaaaattatgagttttcaaatttaattcctataaaattttaagggtaattttagccctccataatattttag 36235845  T
Q  238 tttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    ||||||| || ||| |  ||||||||||||||||| ||| |||| | | ||||| |||| ||||||| ||||||||||    
T  36235846 tttgtaagaacagtccccattttaaaaactttttataaaaaatgaatatttttattcctccaaaatagtccttataaa 36235923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 315
Target Start/End: Original strand, 16089694 - 16089854
Alignment:
Q  155 tttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttca 254  Q
    |||||| |||||| | | || ||||||||| ||||||||| ||||||||||| | ||| |||||| |||  | |||| | |||||||||| ||||||       
T  16089694 tttagtccctatatagttatgagtttttaagtttagtcccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaagaatagtctc 16089793  T
Q  255 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    | |||| ||||||||||||||| |||||  ||||||||||||  |||||| ||| ||||||    
T  16089794 tgtttttaaaactttttacaaaaaatgggtacttttagtcctctaaaatagtccctataaa 16089854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 5459043 - 5459101
Alignment:
Q  138 aaaagggtaaatatgtttttagttcctataaaatcataagtttttaattttagtcccta 196  Q
    |||||| ||||||||||||||||  ||||||||| |||||||||||| |||||||||||    
T  5459043 aaaaggttaaatatgtttttagtctctataaaattataagtttttaagtttagtcccta 5459101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 15070000 - 15070076
Alignment:
Q  228 aataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 304  Q
    |||| |||||||||||| ||||||    ||||| ||||||||||||||| |||||| | ||||||||||||||||||    
T  15070000 aatattgtagtttgtaataatagtctcgattttgaaaactttttacaaaaaatggatatttttagtccttcaaaata 15070076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 273
Target Start/End: Original strand, 38607295 - 38607423
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||| | |||| ||| |||  ||||||||| ||||||  ||||||||||||| | ||| |||||| |||  |||||| |||||||| | |    
T  38607295 taaatatgtttttaatacctaaaaactcaagagtttttaagtttagtttctataaaattttaattgtaattttagtccttcataatattgtagtttttta 38607394  T
Q  245 aaatagttcatattttaaaaactttttac 273  Q
     |||||| | |||||| ||||||| ||||    
T  38607395 gaatagtccttattttgaaaacttgttac 38607423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 21114568 - 21114667
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||||||||||||||  ||||||||||| ||  |||||| ||||||  ||| ||||||||| || || |||||| || | |||||| ||||||||||||    
T  21114568 taaatatgtttttagtatctataaaatcagaaacttttaagtttagtttctagaaaattttaatgataattttagtccaccataatattgtagtttgtaa 21114667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 30403647 - 30403572
Alignment:
Q  235 tagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatcctt 310  Q
    |||||||||| ||||||   |||||||||||||||||||||| ||||| ||| |||||| || ||||||| |||||    
T  30403647 tagtttgtaagaatagtcattattttaaaaactttttacaaaaaatgggcacatttagtactccaaaatagtcctt 30403572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 6502282 - 6502336
Alignment:
Q  261 aaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    |||||||||||||||| | |||| |||||||||||| ||||||| ||| ||||||    
T  6502282 aaaaactttttacaaaaattggatacttttagtcctccaaaatagtccctataaa 6502336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 15069930 - 15069996
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggt 211  Q
    ||||||||||||||   |||| |||||||| ||||||||  |||||||||| |||||||||| ||||    
T  15069930 taaatatgtttttatgccctacaaaatcatgagtttttatgtttagtccctgtaaaattttaatggt 15069996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 22861072 - 22860975
Alignment:
Q  197 taaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtcct 296  Q
    |||||||||| | ||| |||||| |||||||| || |||||||||| | |||   || ||||||||||| |||||||||| |||||| |  |||||||||    
T  22861072 taaaattttaattgtaattttagtcctctatagtattgtagtttgttataat---tcctattttaaaaagtttttacaaaaaatggatatatttagtcct 22860976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 4294818 - 4294859
Alignment:
Q  167 aaaatcataagtttttaattttagtccctataaaattttagt 208  Q
    |||||||||| ||||||| |||||||| ||||||||||||||    
T  4294818 aaaatcataaatttttaagtttagtccttataaaattttagt 4294859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 315
Target Start/End: Complemental strand, 5459265 - 5459137
Alignment:
Q  186 tttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggaca 285  Q
    ||||||||||||||||||||| |||||  ||||| |||  |||||| | |||||| ||| ||| || | ||||||  ||| ||| |||||| |||| | |    
T  5459265 tttagtccctataaaattttaatggtaaatttagtccttcataatattatagtttataagaat-gtccctattttttaaattttctacaaaaaatgaata 5459167  T
Q  286 cttttagtccttcaaaataatccttataaa 315  Q
    |||||| |||| ||||||| ||| ||||||    
T  5459166 cttttattcctccaaaatagtccctataaa 5459137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 16089653 - 16089706
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctata 198  Q
    |||||||||||||||| |||||| | | || ||||||||| |||||||||||||    
T  16089653 taaatatgtttttagtccctatatagttatgagtttttaagtttagtccctata 16089706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 1298950 - 1298894
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaa 201  Q
    |||||||||||||||| |||| ||||| | ||| |||||| ||||||||||| ||||    
T  1298950 taaatatgtttttagtccctacaaaattacaagcttttaaatttagtccctacaaaa 1298894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 378
Target Start/End: Original strand, 15070125 - 15070153
Alignment:
Q  350 agggactaaacttaaaaatttgtaatttt 378  Q
    |||||||||||||||||||||||||||||    
T  15070125 agggactaaacttaaaaatttgtaatttt 15070153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 39344582 - 39344741
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||||| |||||||||| || |||||||||| ||||||| || |||||||||||||||||| |||||  ||||| |||| |||||| ||||||||||||    
T  39344582 taaatatatttttagttcatacaaaatcataaatttttaaattaagtccctataaaattttaatggtaactttagtcctccataatattgtagtttgtaa 39344681  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 304  Q
     ||||||||||||||| ||||| ||||| ||| | ||||||||||||||||| |||||||    
T  39344682 gaatagttcatattttgaaaaccttttaaaaaaattggacacttttagtcctccaaaata 39344741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 145 - 315
Target Start/End: Original strand, 12596853 - 12597023
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||||||||||||||  ||| |||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||| | |||| ||||||||||||    
T  12596853 taaatatgtttttagtctctacaaaatcataagtttttaagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagtttgtaa 12596952  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    || ||||   |||||| ||||| ||||||||| |||||| |  ||||||||| ||||||| ||| ||||||    
T  12596953 aattagtctctattttgaaaacattttacaaaaaatggatatatttagtcctccaaaatagtccctataaa 12597023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 145 - 304
Target Start/End: Complemental strand, 24916206 - 24916049
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| | ||||||||||| ||||||||| ||||||||||||||||||||| ||||| |||| | |||| | ||| |||||||||||||    
T  24916206 taaatatgtttttagtccatataaaatcatgagtttttaagtttagtccctataaaattttaatggtaattttcgtcctccaaaat-atgtagtttgtaa 24916108  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 304  Q
    |||||| || ||||||  |||||||||| ||| |||||| | |||||||||| |||||||    
T  24916107 aaatag-tcctattttggaaactttttagaaaaaatggatatttttagtcctccaaaata 24916049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 145 - 290
Target Start/End: Complemental strand, 26938773 - 26938628
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||| ||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||| |||| | |||| |||||   |||||||||||    
T  26938773 taaatatgcttttagtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaatttttgtcctccataatttagtagtttgtaa 26938674  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacactttt 290  Q
     |||||| | |||||| ||||||||||  ||| |||||||||||||    
T  26938673 gaatagtccctattttgaaaacttttttgaaaaaatggacactttt 26938628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 145 - 304
Target Start/End: Complemental strand, 26939032 - 26938876
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||| ||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||| |||||| |||| |||||   ||  |||||||    
T  26939032 taaatatgcttttagtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaattttagtcctccataatttagt--tttgtaa 26938935  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 304  Q
     |||||| | |||||| ||||||||||  | | |||||||||||||||||||||||||||    
T  26938934 gaatagtccctattttgaaaacttttt-tataaaatggacacttttagtccttcaaaata 26938876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 193 - 315
Target Start/End: Original strand, 32796980 - 32797102
Alignment:
Q  193 cctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttag 292  Q
    |||||||| ||||| | ||| |||||| |||||| | || |||||||||||| |||||| |||||||||||||||||||||||| ||| || |||||| |    
T  32796980 cctataaatttttaatagtaattttagtcctctaaagtattgtagtttgtaagaatagtccatattttaaaaactttttacaaaaaatagatacttttgg 32797079  T
Q  293 tccttcaaaataatccttataaa 315  Q
    |||| ||||||| ||||||||||    
T  32797080 tcctccaaaatagtccttataaa 32797102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 167 - 315
Target Start/End: Complemental strand, 10467631 - 10467482
Alignment:
Q  167 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 266  Q
    ||||||| || ||||||| |||| ||| |||||||||||| ||||| |||||  |||| |||||| ||||  |||||| |||||| | |||||| |||||    
T  10467631 aaaatcacaaatttttaagtttattccttataaaattttaatggtaattttaatcctccataatattgtaacttgtaagaatagtccctattttgaaaac 10467532  T
Q  267 tttttac-aaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    ||||||| ||| ||||||||||||||||||| ||||||| ||| ||||||    
T  10467531 tttttacaaaaaaatggacacttttagtcctccaaaatagtccctataaa 10467482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 145 - 293
Target Start/End: Original strand, 33038214 - 33038362
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||| ||||||||||| |||| |||| ||| |  |||||| |||||| ||||| |||||||| ||  | |||||  |||| |||||| || |||||||||    
T  33038214 taaaaatgtttttagtccctacaaaaacatcaacttttaagtttagttcctattaaattttaatgaaaattttaatcctccataatattgcagtttgtaa 33038313  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagt 293  Q
     |||||||| |||||||||||||||||||| | |||||| |||||||||    
T  33038314 gaatagttcctattttaaaaactttttacagaaaatggatacttttagt 33038362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 42024154 - 42023985
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||||||| |||||| | || |||||||  ||||||| | ||||||||| ||||||||||| || || |||||| |||| | |||| ||||| ||||||    
T  42024154 taaatatgtgtttagtccttacaaaatcacgagtttttgagtttagtccccataaaattttaatgctaattttagtcctccaaaatattgtag-ttgtaa 42024056  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
     |||||| | ||||| |||  |||||||||||  ||| |||||||||||||| ||||||| ||| ||||||    
T  42024055 taatagtccctatttaaaattctttttacaaaatatgtacacttttagtcctccaaaatagtccatataaa 42023985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 145 - 308
Target Start/End: Complemental strand, 17157146 - 17156980
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| |||||||| | |||||||  ||||||||||| |||||||| ||||| |||||| |||| | |||| | |||||||| |    
T  17157146 taaatatgtttttagtccctacaaaatcatgattttttaaacttagtccctatgaaattttaatggtaattttagtcctccaaaatattttagtttgtta 17157047  T
Q  245 aaatagttcatattttaaaaacttttta---caaataatggacacttttagtccttcaaaataatcc 308  Q
    ||||||  | |||||| |||||| | ||    ||| |||||| |||||||||||| ||| |||||||    
T  17157046 aaatagcccctattttgaaaactatatatacaaaaaaatggatacttttagtcctccaagataatcc 17156980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 260
Target Start/End: Original strand, 17153537 - 17153652
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| |||||||| |||||||||  ||||||||||| |||||||| ||||| |||||| |||| | |||| |  ||||||| |    
T  17153537 taaatatgtttttagtccctacaaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctccaaaatatttaagtttgtta 17153636  T
Q  245 aaatagttcatatttt 260  Q
    ||||||| | ||||||    
T  17153637 aaatagtccctatttt 17153652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 304
Target Start/End: Complemental strand, 17219875 - 17219713
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaatt--ttagtccctataaaattttagtggtatttttagccct-ctataataatgtagtttg 241  Q
    ||||||||||||||||  ||| |||||||| || ||||||    ||||||||||| |||||||| ||||| |||||| ||| ||| |||| | |||||||    
T  17219875 taaatatgtttttagtctctacaaaatcatgagattttaagcgcttagtccctatgaaattttaatggtaattttagtccttcta-aatattttagtttg 17219777  T
Q  242 taaaaatagttcatattttaaaaactttttac-aaataatggacacttttagtccttcaaaata 304  Q
    |||||||||| | |||||| |||||||| ||| ||| |||||| | |||||||||| |||||||    
T  17219776 taaaaatagtccctattttgaaaactttatacaaaaaaatggatatttttagtcctccaaaata 17219713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 145 - 296
Target Start/End: Complemental strand, 24292349 - 24292198
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||| |||||||||| |||| ||||||| ||| ||| || |||||||||||| |||||||| | ||| |||||| |||  |||| | ||  ||||||||    
T  24292349 taaatgtgtttttagtccctaaaaaatcacaagctttcaagtttagtccctattaaattttaattgtaattttagtccttcataaaattgatgtttgtaa 24292250  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtcct 296  Q
     || ||| | ||||||||||  |||||| ||| |||||| ||||||||||||    
T  24292249 gaacagtccctattttaaaagatttttataaaaaatggatacttttagtcct 24292198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 16483745 - 16483848
Alignment:
Q  147 aatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaa 246  Q
    |||||||||| | | |||| | |||||| ||||||||| |||||||||| |||||||||| ||||| |||||| | || | |||| ||||||||||||||    
T  16483745 aatatgttttcaatccctacagaatcatgagtttttaagtttagtccctgtaaaattttaatggtaattttagtcttcaa-aatattgtagtttgtaaaa 16483843  T
Q  247 atagt 251  Q
    |||||    
T  16483844 atagt 16483848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 8026016 - 8026136
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||||||||| |||| |||||||||| | || |||| || |||| || ||||||||||||| ||||  || ||| |||| |||||   |||||||||||    
T  8026016 taaatatgtttatagtccctataaaattacaaattttaaagtttaatctctataaaattttaatggtgattgtagtcctccataatttagtagtttgtaa 8026115  T
Q  245 aaatagttcatattttaaaaa 265  Q
     |||||| | |||||||||||    
T  8026116 gaatagtccctattttaaaaa 8026136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 8026272 - 8026216
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaa 201  Q
    ||||||||| |||||| |||| ||||| |||||||||||| ||||||||||||||||    
T  8026272 taaatatgtatttagtccctacaaaattataagtttttaagtttagtccctataaaa 8026216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 30743922 - 30743997
Alignment:
Q  176 agtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagt 251  Q
    |||||| || |||||| ||||||||| |||| || || |||||| |||| |||||| |||||||||||||||||||    
T  30743922 agttttcaaatttagtacctataaaactttaatgttaattttagtcctcaataatattgtagtttgtaaaaatagt 30743997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 2414910 - 2414956
Alignment:
Q  185 ttttagtccctataaaattttagtggtatttttagccctctataata 231  Q
    |||||||||||||||||||||| ||||| |||||| |||||||||||    
T  2414910 ttttagtccctataaaattttaatggtaattttagtcctctataata 2414956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 43651359 - 43651458
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||||||||||||||  ||||||||||| ||  |||||| ||||||  ||| ||||||||| || || |||||| || | | |||| ||||||||||||    
T  43651359 taaatatgtttttagtatctataaaatcagaaacttttaagtttagtttctagaaaattttaatgataattttagtccaccacaatattgtagtttgtaa 43651458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 41828016 - 41828066
Alignment:
Q  168 aaatcataagtttttaattttagtccctataaaattttagtggtattttta 218  Q
    ||||||||||||||||| |||||||  |||||||||||| ||||| |||||    
T  41828016 aaatcataagtttttaagtttagtcgatataaaattttaatggtaatttta 41828066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 41590756 - 41590719
Alignment:
Q  134 taataaaagggtaaatatgtttttagttcctataaaat 171  Q
    ||||||| || |||||||||||||||||||||||||||    
T  41590756 taataaagggttaaatatgtttttagttcctataaaat 41590719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 12911085 - 12911025
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttt 205  Q
    ||||||| |||||||  | || |||| ||| ||||||||| ||||||||||||||||||||    
T  12911085 taaatatatttttagcccttacaaaaccattagtttttaagtttagtccctataaaatttt 12911025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 26736111 - 26736027
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataa 229  Q
    |||||||||||||||||| || |||||||| |||| |||  ||||||  ||||||| ||||| || || ||||||  ||||||||    
T  26736111 taaatatgtttttagttcatacaaaatcatgagttattaggtttagtttctataaacttttaatgataattttagttctctataa 26736027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 26938540 - 26938596
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaa 201  Q
    |||||||||||||||| |||| ||||| | ||| |||||| ||||||||||| ||||    
T  26938540 taaatatgtttttagtccctacaaaattacaagcttttaagtttagtccctacaaaa 26938596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 145 - 296
Target Start/End: Complemental strand, 10516738 - 10516588
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||| || || || ||||||||||| |||||| ||||||||||||    
T  10516738 taaatatgtttttagtccctacaaaatcataagtttttaaatttagtccctataaaattgtaatgataattttagccctccataatattgtagtttgtaa 10516639  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtcct 296  Q
     |||||| | || ||||| |||||||||||||  ||||| ||||||||||||    
T  10516638 gaatagtcccta-tttaataactttttacaaaatatggatacttttagtcct 10516588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 145 - 290
Target Start/End: Original strand, 3807068 - 3807213
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||||| ||||| |||| | |||| |||||   |||||||||||    
T  3807068 taaatatgtttttagtccctataaaatcataagtttttatgtttagtctctataaaattttaatggtaattttcgtcctccataatttagtagtttgtaa 3807167  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacactttt 290  Q
     |||||| | |||||| ||||||||| ||||| ||| |||||||||    
T  3807168 gaatagtccctattttgaaaacttttaacaaaaaatagacactttt 3807213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 315
Target Start/End: Original strand, 6197810 - 6197979
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||||||||||| || |||| || |||||||| |||||||||||| |||||  ||||| |||| |||||   |||||||||||    
T  6197810 taaatatgtttttagtccctataaaatcacaa-ttttcaagtttagtccatataaaattttaatggtaaatttagtcctccataatttagtagtttgtaa 6197908  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
     ||||||   |||||| ||||||||||| ||| |||||||||||||| |||| ||||||| ||| ||||||    
T  6197909 gaatagtctctattttgaaaactttttagaaaaaatggacacttttattcctccaaaatagtccctataaa 6197979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 145 - 315
Target Start/End: Original strand, 17957029 - 17957199
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||||| ||| || ||||||||| |||||| || ||||||||||| | ||| |||||| |||  | |||| | ||||||||||    
T  17957029 taaatatgtttttagtccctatataattatgagtttttaagtttagttccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaa 17957128  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
     ||||||   | |||| ||||||||||||||| |||||| || ||||||||| ||||||| ||| ||||||    
T  17957129 gaatagtctctgttttgaaaactttttacaaaaaatggatacctttagtcctccaaaatagtccctataaa 17957199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 3336152 - 3336025
Alignment:
Q  148 atatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaa 247  Q
    ||||||||||| | | || |||||||||| ||||||| ||||| ||||||||||||||||||||| |||||| |||||| |||| |||| ||||||  ||    
T  3336152 atatgtttttaatccttacaaaatcataaatttttaagtttagaccctataaaattttagtggtaattttagtcctctaaaatattgtaatttgtatgaa 3336053  T
Q  248 tagttcatattttaaaaactttttacaa 275  Q
    |||||  |||| | ||||||||||||||    
T  3336052 tagttgttattctgaaaactttttacaa 3336025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 25043002 - 25042897
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| |||||||| |||||| || |||||||| |||||||||||| ||||| |||||| ||||| | ||| ||||||||||||    
T  25043002 taaatatgtttttagtccctacaaaatcatgagttttcaaatttagtcc-tataaaattttaatggtaattttagtcctctgtgatattgtagtttgtaa 25042904  T
Q  245 aaatagt 251  Q
     ||||||    
T  25042903 gaatagt 25042897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 4405943 - 4405838
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| ||| ||||| ||||   |||| |||||| | || |||||||    
T  4405943 taaatatgtttttagt-cctacaaaatcataagtttttaagtttagtccctataaaatattaatggtaatttttatcctccataatattctactttgtaa 4405845  T
Q  245 aaatagt 251  Q
     ||||||    
T  4405844 gaatagt 4405838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 315
Target Start/End: Complemental strand, 4254636 - 4254536
Alignment:
Q  215 tttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataa 314  Q
    ||||| |||| | |||| ||||||||||||||||| | | ||||||||||||| |||||||| ||||||||||||||  ||| ||||||| ||||| |||    
T  4254636 tttagtcctcaaaaatactgtagtttgtaaaaataatccctattttaaaaactgtttacaaaaaatggacacttttaaccctccaaaatagtccttgtaa 4254537  T
Q  315 a 315  Q
    |    
T  4254536 a 4254536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 12611794 - 12611902
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| |||||||| | ||||||| |||| ||||| |||||||||| ||||| |||||| |||| |||| | | |||||| |||    
T  12611794 taaatatgtttttagtccctacaaaatcatgaatttttaaatttaatccctctaaaattttaatggtaattttagtcctccataacattatagtttataa 12611893  T
Q  245 aaatagttc 253  Q
     ||||||||    
T  12611894 gaatagttc 12611902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 145 - 268
Target Start/End: Original strand, 24672269 - 24672392
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||| |  ||| ||| |||  | |||| || ||||||||||||||||||||| ||||| |||||| |||| |||||| |||| |||||||    
T  24672269 taaatatgtttttaatctctacaaattcacgatttttcaagtttagtccctataaaattttaatggtaattttagtcctccataatattgtaatttgtaa 24672368  T
Q  245 aaatagttcatattttaaaaactt 268  Q
     ||||||   ||||||||||||||    
T  24672369 taatagtctctattttaaaaactt 24672392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 276
Target Start/End: Complemental strand, 30465318 - 30465195
Alignment:
Q  153 tttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagtt 252  Q
    |||||||| |||||||||| |  |||||| || |||||  |||||||||||||| ||||| ||||||   || |||||| || ||||||||| ||||||     
T  30465318 tttttagtccctataaaattaagagttttcaactttagatcctataaaattttaatggtaattttagttttccataatattgaagtttgtaagaatagtc 30465219  T
Q  253 catattttaaaaactttttacaaa 276  Q
    | ||||||||||| |||| |||||    
T  30465218 cctattttaaaaaattttgacaaa 30465195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 14198597 - 14198537
Alignment:
Q  255 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    |||||| ||||||||||| ||| ||| || | |||||||||||||||||||||||||||||    
T  14198597 tatttttaaaactttttataaaaaatagatatttttagtccttcaaaataatccttataaa 14198537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 4409619 - 4409537
Alignment:
Q  148 atatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataata 231  Q
    ||||||||||||| |||| ||||||| |||||||||| |||| |||||||||||| | | ||||| |||||| |||| ||||||    
T  4409619 atatgtttttagt-cctacaaaatcacaagtttttaagtttaatccctataaaatatcaatggtaattttagtcctccataata 4409537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 10311637 - 10311736
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||| ||| | ||||||||||  |||||| || |||||| |||||||||||||| ||||| |||||| | || | |||| |||| |||||||    
T  10311637 taaatatgttttaagtccttataaaatcacgagttttcaaatttagttcctataaaattttaatggtaattttagtcatcaacaatattgtaatttgtaa 10311736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 17141932 - 17141881
Alignment:
Q  168 aaatcataagtttttaattttagtccctataaaattttagtggtatttttag 219  Q
    ||||||||||||||||| |||||||  |||||||||||| ||||| ||||||    
T  17141932 aaatcataagtttttaagtttagtcgatataaaattttaatggtaattttag 17141881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 387
Target Start/End: Original strand, 34187672 - 34187706
Alignment:
Q  353 gactaaacttaaaaatttgtaattttgtaaggact 387  Q
    ||||||||||||||||||||||||||||| |||||    
T  34187672 gactaaacttaaaaatttgtaattttgtagggact 34187706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 14897305 - 14897365
Alignment:
Q  255 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    |||||| ||||||||||||||| |||  | | |||| ||||| ||||||||||||||||||    
T  14897305 tattttgaaaactttttacaaaaaatatatatttttggtcctccaaaataatccttataaa 14897365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 145 - 323
Target Start/End: Complemental strand, 6449839 - 6449661
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||||| |||||| |||||| |||||||  |||||| || |||| | || ||||||||||| || || ||||||   | ||||||||||||||||||||    
T  6449839 taaatatatttttaattcctacaaaatcacgagttttcaagtttaatgcccataaaattttaatgataattttagttttttataataatgtagtttgtaa 6449740  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaatataaata 323  Q
    ||||||| | ||||||||||||||||| ||||  |||||||||||||||| ||||||||| || ||||||||| |||||    
T  6449739 aaatagtccctattttaaaaactttttgcaaaagatggacacttttagtctttcaaaatagtctttataaatacaaata 6449661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 140 - 315
Target Start/End: Original strand, 40390884 - 40391058
Alignment:
Q  140 aagggtaaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtt 239  Q
    |||| |||||||||||||||| |||| |||||||| |||||| || |||||| |||||||||||||| || || |||||| |||| || ||| |||||||    
T  40390884 aaggttaaatatgtttttagtccctacaaaatcatgagttttcaagtttagttcctataaaattttaatgataattttagtcctccat-atattgtagtt 40390982  T
Q  240 tgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    ||||| ||||||   |||||| ||||| ||||||||| |||| | ||||||||| || ||||||| ||| ||||||    
T  40390983 tgtaagaatagtctctatttttaaaacattttacaaaaaatgaatacttttagttctccaaaatagtccctataaa 40391058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 153 - 324
Target Start/End: Original strand, 15025785 - 15025955
Alignment:
Q  153 tttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagtt 252  Q
    |||||||| |||| |||||||  |||| |||| |||||| | |||||||||||| ||||| |||||  |||||| |||| | |||||||| | ||||||     
T  15025785 tttttagtccctacaaaatcacgagttattaagtttagttcttataaaattttaatggtaattttaatcctctaaaatattatagtttgtgataatagtc 15025884  T
Q  253 catattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttat-aaatataaatag 324  Q
    | |||||| ||||||||||||||| |||| | || ||||||||| ||||||| ||||||| ||||||||||||    
T  15025885 cctattttgaaaactttttacaaa-aatgtatac-tttagtcctccaaaatagtccttataaaatataaatag 15025955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 10573942 - 10574059
Alignment:
Q  136 ataaaagggtaaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgt 235  Q
    ||||| || |||||||||||||||||| || ||||||| ||||||| || ||||||  |||||||| | || ||| | |||||  |||| |||||| |||    
T  10573942 ataaagggttaaatatgtttttagttcttacaaaatcacaagttttcaaatttagtttctataaaaatataatggcaattttaatcctccataatattgt 10574041  T
Q  236 agtttgtaaaaatagttc 253  Q
    ||||||||||||||||||    
T  10574042 agtttgtaaaaatagttc 10574059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 271
Target Start/End: Original strand, 6156049 - 6156152
Alignment:
Q  167 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 266  Q
    ||||||||  ||||||||||| || | ||||||||||||| |||| ||||||| | || |||||| |||||||| ||||||||||||||||||| | |||    
T  6156049 aaaatcatgtgtttttaattt-agactctataaaattttaatggtttttttagtcttccataatattgtagtttataaaaatagttcatattttgataac 6156147  T
Q  267 ttttt 271  Q
    |||||    
T  6156148 ttttt 6156152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 15882300 - 15882221
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctc 224  Q
    |||||||||||||||| |||| |||||||| |||||||||  ||||||||||| |||||||| ||||| |||||| ||||    
T  15882300 taaatatgtttttagtccctacaaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctc 15882221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 315
Target Start/End: Original strand, 38377811 - 38377964
Alignment:
Q  149 tatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaat 248  Q
    |||||||||||| | || ||||||| || ||||||| ||||||||||||||||||||| ||||| ||||||             | || ||| ||| |||    
T  38377811 tatgtttttagtccttacaaaatcacaaatttttaagtttagtccctataaaattttaatggtaattttag-------------tctaatttataagaat 38377897  T
Q  249 agttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    ||| | |||||||||||||||||| ||| |||| |||||||||||||| ||||||| ||| ||||||    
T  38377898 agtccctattttaaaaactttttataaaaaatgaacacttttagtcctccaaaatagtccctataaa 38377964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 304
Target Start/End: Complemental strand, 31050144 - 31049984
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||| | |||  ||||||| | |||||||| ||||| |||||||||||| || | |||  |||||  ||| |||||| ||||| ||||||    
T  31050144 taaatatgtttttaatccctgcaaaatcacatgtttttaagtttagcccctataaaattataattgtaaatttagttctcgataatattgtagcttgtaa 31050045  T
Q  245 aaatagttcatattttaaaaactttttac-aaataatggacacttttagtccttcaaaata 304  Q
    | |||||   |||||| ||||| |||||| ||| |||||||| ||||||| || |||||||    
T  31050044 agatagtcattattttgaaaaccttttacaaaaaaatggacatttttagttctccaaaata 31049984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 40391145 - 40391085
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttt 205  Q
    |||||||||||||||| |||||||||| | |||||||||| ||||||||||| ||| ||||    
T  40391145 taaatatgtttttagtccctataaaattacaagtttttaagtttagtccctacaaattttt 40391085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 784250 - 784192
Alignment:
Q  141 agggtaaatatgtttttagttcctataaaatcataagtttttaattttagtccctataa 199  Q
    ||||| |||||||||||||| | ||||||||||  ||||||||| ||||||||||||||    
T  784250 agggttaatatgtttttagtccttataaaatcacgagtttttaagtttagtccctataa 784192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 38377857 - 38377820
Alignment:
Q  350 agggactaaacttaaaaatttgtaattttgtaaggact 387  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  38377857 agggactaaacttaaaaatttgtgattttgtaaggact 38377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 784000 - 784056
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaa 201  Q
    ||||||| |||||| ||| |||||||| |||||||||||| |||||||| |||||||    
T  784000 taaatatatttttatttcttataaaattataagtttttaaatttagtccttataaaa 784056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 784168 - 784088
Alignment:
Q  235 tagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    |||||| |||||||| | | |||||| ||||||||||||||| |||||| | |||||||| | ||||||| ||| ||||||    
T  784168 tagtttctaaaaataatccctattttgaaaactttttacaaaaaatggatatttttagtcatccaaaatagtccgtataaa 784088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 14806451 - 14806511
Alignment:
Q  255 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    |||||| ||||||||||||||| ||| || | |||| ||||| ||||||||||||||||||    
T  14806451 tattttgaaaactttttacaaaaaatagatatttttggtcctccaaaataatccttataaa 14806511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 268
Target Start/End: Complemental strand, 22593453 - 22593330
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||||||||||| || | ||  |||||| ||||||| || ||||||  |||| |||||||| ||||  |||||| | |||| ||||   ||||||||||    
T  22593453 taaatatgttttttgtccttacgaaatcacaagttttcaagtttagtttctattaaattttaatggtgattttagtcttctacaatatcatagtttgtaa 22593354  T
Q  245 aaatagttcatattttaaaaactt 268  Q
    ||||||| | | ||||||||||||    
T  22593353 aaatagtcccttttttaaaaactt 22593330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 26081297 - 26081196
Alignment:
Q  176 agtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaa 275  Q
    |||||| |||||||||  | ||||||||||| || || |||||  |||| | |||| |  ||||| ||| |||||||| |||||||||||||||| ||||    
T  26081297 agttttcaattttagtttcgataaaattttattgataattttactcctccacaatattaaagtttataagaatagttcctattttaaaaacttttgacaa 26081198  T
Q  276 at 277  Q
    ||    
T  26081197 at 26081196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 43914042 - 43914099
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaat 202  Q
    ||||||| |||||||| ||||||||||||  ||||||||| |||||| | ||||||||    
T  43914042 taaatatatttttagtccctataaaatcacgagtttttaagtttagttcatataaaat 43914099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 47472231 - 47472199
Alignment:
Q  354 actaaacttaaaaatttgtaattttgtaaggac 386  Q
    |||||||||||||||||||||||||||| ||||    
T  47472231 actaaacttaaaaatttgtaattttgtagggac 47472199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 145 - 315
Target Start/End: Original strand, 34359330 - 34359500
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| | || |||||||| ||||||||| |||||||| |||||||||||| ||||| |||||  |||| | |||| | ||||||||||    
T  34359330 taaatatgtttttagtccttacaaaatcatgagtttttaagtttagtccatataaaattttaatggtaattttattcctccaaaatattatagtttgtaa 34359429  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    |||| || | | |||| ||||||||||||||| |||||| | |||||||||||||||| | ||| ||||||    
T  34359430 aaatggtccctgttttgaaaactttttacaaaaaatggataattttagtccttcaaaaaagtccctataaa 34359500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 315
Target Start/End: Original strand, 39340760 - 39340938
Alignment:
Q  135 aataaaagggtaaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatg 234  Q
    |||||| || |||||||||||| ||| |||| |||||||  ||||||||| ||||||||||||||| ||||| ||||| |||||| | || | |||| ||    
T  39340760 aataaagggttaaatatgttttgagtccctacaaaatcactagtttttaagtttagtccctataaagttttaatggtaattttagtcatccaaaatattg 39340859  T
Q  235 tagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    ||||||||||||||||| | ||||||  ||  |||||||||| ||||   |||||||||||| ||||||| || |||||||    
T  39340860 tagtttgtaaaaatagtccctatttt--aatttttttacaaaaaatgtgtacttttagtcctccaaaatagtcattataaa 39340938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 50334804 - 50334632
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||||| ||||||||  |||||||||||| ||||||| | |||| |||||||||||||||| || || |||||| | || | |||| ||||||||||||    
T  50334804 taaatatatttttagtctctataaaatcatgagttttttactttaatccctataaaattttaatgataattttagtcttccaaaatattgtagtttgtaa 50334705  T
Q  245 aaatagttcatattttaaaaac--tttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    || |||||| |||||| || ||  |||||||||| |||||| | ||||||||||  |||||| ||| ||||||    
T  50334704 aattagttcctattttgaatactttttttacaaaaaatggatatttttagtcctctaaaatagtccctataaa 50334632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 44447021 - 44446851
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||||| ||| || ||||||||| |||| |||| ||||||||||| | ||| |||||| |||  | |||| | ||||||||||    
T  44447021 taaatatgtttttagtccctatataattatgagtttttaagtttaatcccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaa 44446922  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
     ||||||   | |||| ||||||||||||||| ||||   |||||||||||| ||||||| ||| ||||||    
T  44446921 gaatagtctctgttttgaaaactttttacaaaaaatgtgtacttttagtcctccaaaatagtccctataaa 44446851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 314
Target Start/End: Original strand, 45743779 - 45743898
Alignment:
Q  195 tataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtc 294  Q
    |||||||||||| | |||  ||||| ||| |||| || |||||||||||| ||| || | |||||||||||||||||||||| ||||||||||||| |||    
T  45743779 tataaaattttaatagtaactttagtcctttatagtagtgtagtttgtaagaatggtccctattttaaaaactttttacaaaaaatggacactttttgtc 45743878  T
Q  295 cttcaaaataatccttataa 314  Q
    || ||||||| || ||||||    
T  45743879 ctccaaaatagtctttataa 45743898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 28769673 - 28769505
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| ||||||||||    |||||| || || ||||  |||||||||||| ||||  |||| | |||| |||||| ||||||||||||    
T  28769673 taaatatgtttttagtccctataaaattccgagttttcaaatt-agtct-tataaaattttaatggtgatttttgtcctccataatattgtagtttgtaa 28769576  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
     ||||||   |||||||||||||||||||| | ||| || ||||||| |||| ||||||| ||||||||||    
T  28769575 gaatagtctttattttaaaaactttttacagaaaattgatacttttaatcctccaaaatagtccttataaa 28769505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 20336780 - 20336900
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| |||||||  |||||| || |||||||| |||||||||||| ||||| |||||| |||| |||||| || | |||||||    
T  20336780 taaatatgtttttagtccctacaaaatcaagagttttcaactttagtccttataaaattttaatggtaattttagtcctccataatattgaattttgtaa 20336879  T
Q  245 aaatagttcatattttaaaaa 265  Q
      ||||| | |||||| ||||    
T  20336880 ttatagtccctattttgaaaa 20336900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 13899456 - 13899564
Alignment:
Q  137 taaaagggt-aaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgt 235  Q
    ||||||||| |||||||||||||||||||| | |||||  ||| || || |||||| |||||||||||||| ||||| |||||| |||| |||||| |||    
T  13899456 taaaagggtcaaatatgtttttagttcctacataatca--agtcttgaagtttagttcctataaaattttaatggtaattttagtcctccataatattgt 13899553  T
Q  236 agtttgtaaaa 246  Q
    ||||| |||||    
T  13899554 agtttataaaa 13899564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 20314887 - 20315018
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||| ||||||| |||| |||||||  |||||| || |||||||| |||||||||||| ||| | |||||| |||| |||||| || | |||||||    
T  20314887 taaatatgcttttagtccctacaaaatcaagagttttcaactttagtccttataaaattttaatggcaattttagtcctccataatattgaattttgtaa 20314986  T
Q  245 aaatagttcatattttaaaaactttttacaaa 276  Q
     ||||||   |||||| |||| ||||||||||    
T  20314987 taatagtctctattttgaaaattttttacaaa 20315018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 324
Target Start/End: Complemental strand, 22853489 - 22853361
Alignment:
Q  197 taaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtcct 296  Q
    |||||||||| ||||| |||||| |||| |||||| | || |||||||||||||| | ||||||||||| ||| ||| || ||| || ||||||| ||||    
T  22853489 taaaattttaatggtaattttagtcctccataatattttaatttgtaaaaatagtccttattttaaaaaatttatactaaaaatagatacttttaatcct 22853390  T
Q  297 tcaaaataatccttat-aaatataaatag 324  Q
    | |||||| | | ||| ||||||||||||    
T  22853389 ttaaaatagttcctataaaatataaatag 22853361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 17268848 - 17268957
Alignment:
Q  163 ctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaa 262  Q
    ||||||||| |  ||| ||||| | |||||| |||| ||||||| || || |||||| | |||||| || |||||||||||||||||||  ||||||||     
T  17268848 ctataaaattacgagtgtttaagtatagtccatatacaattttaatgataattttagtcttctatattattgtagtttgtaaaaatagtctatattttat 17268947  T
Q  263 aaacttttta 272  Q
    |||| |||||    
T  17268948 aaacatttta 17268957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 9766151 - 9766052
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||||||||||||||  ||||||||| | ||  |||||| |||| |  ||| ||||||||| || || |||||| |||||| |||| ||||||||||||    
T  9766151 taaatatgtttttagtatctataaaattagaaacttttaagtttattttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 9766052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 16876437 - 16876503
Alignment:
Q  199 aaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaa 265  Q
    |||||||| | ||| |||||| |||| |||||| |||||||||||| |||||| | |||||||||||    
T  16876437 aaattttaattgtaattttagtcctccataatattgtagtttgtaagaatagtccctattttaaaaa 16876503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 16607236 - 16607176
Alignment:
Q  255 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    |||||| ||||||||||||||| |||  | | |||| ||||| ||||||||||||||||||    
T  16607236 tattttgaaaactttttacaaaaaatatatatttttggtcctccaaaataatccttataaa 16607176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 43545400 - 43545340
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttt 205  Q
    |||||||||||||||||||||||||   || |  |||| |||||||||||| |||||||||    
T  43545400 taaatatgtttttagttcctataaatatatcaactttttattttagtccctctaaaatttt 43545340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 52423251 - 52423195
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaa 201  Q
    |||||||||||||||| |||| ||||| ||||||||| |  |||| |||||||||||    
T  52423251 taaatatgtttttagtccctacaaaattataagttttcatgtttaatccctataaaa 52423195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 148 - 315
Target Start/End: Original strand, 20985930 - 20986099
Alignment:
Q  148 atatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaa 247  Q
    ||||||||||| |||||| |||||||  ||||||||| ||||||||||||||||||||| ||||| |||||| | |||| |||| ||||||||| || ||    
T  20985930 atatgtttttaattcctacaaaatcacgagtttttaaatttagtccctataaaattttaatggtaattttagtcttctaaaatattgtagtttgcaagaa 20986029  T
Q  248 tagttcatattttaaaaactttttac--aaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    |||| | |||||| ||||||||||||  ||| ||| || |||||||||||| ||||||| ||| ||||||    
T  20986030 tagtccctattttgaaaactttttacaaaaaaaatagatacttttagtcctccaaaatagtccctataaa 20986099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 33753128 - 33752959
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| ||||||| ||||||| || |||||||| |||||||||||| ||||  ||||||||||| |||||| ||||||||||||    
T  33753128 taaatatgtttttagt-cctacaaaatcacaagttttaaagtttagtccgtataaaattttaatggtgattttagccctccataatattgtagtttgtaa 33753030  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
     ||| ||   |||||| |||  || ||||||| |||| ||||||||| | || ||||||| ||| ||||||    
T  33753029 gaatggtcactattttgaaactttattacaaaaaatgaacacttttacttctccaaaatagtccctataaa 33752959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 145 - 293
Target Start/End: Complemental strand, 50919448 - 50919301
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| | || |||||||||| |||| || ||||||||||||||||||||| ||||| |||||| | || || |||||||| |||||||    
T  50919448 taaatatgtttttagtccttacaaaatcataaatttt-aagtttagtccctataaaattttaatggtaattttagtcttc-atgataatgtaatttgtaa 50919351  T
Q  245 aaatagttcatattttaaaaacttttta-caaataatggacacttttagt 293  Q
    ||||| |  |||||||||||||||||||  ||| ||||||||| ||||||    
T  50919350 aaataatcgatattttaaaaactttttagaaaaaaatggacacatttagt 50919301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 311
Target Start/End: Complemental strand, 16545578 - 16545413
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||| | |||| |||||  | ||||||||| |||| |||||||||||||||| || ||  ||||  |||| | |||| |||||||| |||    
T  16545578 taaatatgtttttaatccctacaaaattttgagtttttaagtttaatccctataaaattttaatgataaatttactcctccaaaatattgtagttt-taa 16545480  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatcctta 311  Q
    |||| || | |||||| |||||||| |||||| |||||| | |||||||||| ||||||| ||||||    
T  16545479 aaatggtccctattttgaaaactttatacaaaaaatggatatttttagtcctccaaaatagtcctta 16545413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 167 - 271
Target Start/End: Original strand, 13392831 - 13392935
Alignment:
Q  167 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 266  Q
    |||||||| |||||| || ||||||||||||||| ||||| || || |||||| | || | |||| ||||||||||||||||||| | ||||||||||||    
T  13392831 aaaatcattagttttaaagtttagtccctataaagttttaatgttaattttagtcatccaaaatattgtagtttgtaaaaatagtccctattttaaaaac 13392930  T
Q  267 ttttt 271  Q
    |||||    
T  13392931 ttttt 13392935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 271
Target Start/End: Complemental strand, 25506709 - 25506585
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||||||| ||||||||||| |||||||  | |||| || |||||| ||||| || ||||| || ||||| ||| ||| ||||||| |||||||||||     
T  25506709 taaatatgtgtttagttcctacaaaatcacga-ttttaaagtttagttcctattaa-ttttaatgttatttgtagtcctttataatattgtagtttgtat 25506612  T
Q  245 aaatagttcatattttaaaaacttttt 271  Q
     |||||| |||||||||||||||||||    
T  25506611 gaatagtccatattttaaaaacttttt 25506585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 29307753 - 29307657
Alignment:
Q  148 atatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||| |||| |||| |||||||| ||||||||| |||||||||||||| |||||| | ||| |||||| |||  | |||| ||||||||||||    
T  29307753 atatgtttctagtccctacaaaatcatgagtttttaagtttagtccctataagattttaattgtaattttagtccttcaaaatactgtagtttgtaa 29307657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 37470983 - 37470916
Alignment:
Q  237 gtttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 304  Q
    |||||||| |||||||| ||||| |||||||||||||||| ||||||  ||||||||||| |||||||    
T  37470983 gtttgtaagaatagttcctatttgaaaaactttttacaaaaaatggatgcttttagtcctccaaaata 37470916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 16545318 - 16545369
Alignment:
Q  141 agggtaaatatgtttttagttcctataaaatcataagtttttaattttagtc 192  Q
    |||||||||||||||||||| |||||||||| | |||||||||| |||||||    
T  16545318 agggtaaatatgtttttagtccctataaaattacaagtttttaagtttagtc 16545369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 3891451 - 3891541
Alignment:
Q  151 tgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttg 241  Q
    ||||||||| ||||| ||||||| || | | ||| ||||||||||||||||||||| ||||| |||||| ||||  ||||| |||| ||||    
T  3891451 tgtttttagatcctacaaaatcacaaatgtataagtttagtccctataaaattttattggtagttttagtcctccgtaatattgtaatttg 3891541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 1236755 - 1236708
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtc 192  Q
    |||||||||||||| | |||| ||||| ||||||||||||||||||||    
T  1236755 taaatatgtttttaatccctaaaaaattataagtttttaattttagtc 1236708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 37471094 - 37471004
Alignment:
Q  152 gtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgt 242  Q
    ||||||||| ||||  ||||||  |||||| || |||||||||||||||| |||| ||||  |||||| |||| |||||| | ||||||||    
T  37471094 gtttttagtccctaccaaatcaagagttttcaagtttagtccctataaaaatttaatggtgcttttagtcctccataatattatagtttgt 37471004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 174
Target Start/End: Complemental strand, 23278822 - 23278793
Alignment:
Q  145 taaatatgtttttagttcctataaaatcat 174  Q
    ||||||||||||||||||||||||||||||    
T  23278822 taaatatgtttttagttcctataaaatcat 23278793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 29102855 - 29102956
Alignment:
Q  164 tataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaa 263  Q
    ||||| ||||| |||||| || ||||||||||||| ||||| | || || |||||| |||| | |||| ||||| ||  ||||||||| | |||||||||    
T  29102855 tataatatcatgagttttcaagtttagtccctatacaatttaaatgataattttagtcctccaaaatattgtagctttcaaaaatagtccctattttaaa 29102954  T
Q  264 aa 265  Q
    ||    
T  29102955 aa 29102956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 35218058 - 35218118
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttt 205  Q
    |||||||||||||||| |||| ||||||| || ||||||| ||||||| ||  ||||||||    
T  35218058 taaatatgtttttagtccctacaaaatcacaattttttaaatttagtctctggaaaatttt 35218118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 315
Target Start/End: Original strand, 34904010 - 34904180
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| ||||||| |||||||||| |||||||||| ||||||| || |  || ||||||  ||  |||||| ||||||||||||    
T  34904010 taaatatgtttttagtccctacaaaatcacaagtttttaagtttagtccctgtaaaattgtaataataattttagttcttcataatattgtagtttgtaa 34904109  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
     |||| | | |||||| ||||||||||||||| |||||| ||||||||||||  |||||| ||||| ||||    
T  34904110 gaataatccctattttgaaaactttttacaaagaatggatacttttagtcctataaaatagtccttttaaa 34904180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 150 - 281
Target Start/End: Original strand, 6191094 - 6191225
Alignment:
Q  150 atgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaata 249  Q
    |||||||||||  |||||||||||| ||| || || ||||||||||||||||||||| ||||| |||||| |||| |||||| |||| ||||||| ||||    
T  6191094 atgtttttagtatctataaaatcattagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatattgtactttgtaagaata 6191193  T
Q  250 gttcatattttaaaaactttttacaaataatg 281  Q
    || | |||||| ||||||||||||||| ||||    
T  6191194 gtccgtattttgaaaactttttacaaaaaatg 6191225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 167 - 296
Target Start/End: Original strand, 855586 - 855715
Alignment:
Q  167 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 266  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||||| |||||| ||||  | ||| |||||||||||  |||||| |||||||| |||||    
T  855586 aaaatcatgagtttttaagtttagtccctataaaattttaatggtaattttagtcctcggtgatattgtagtttgtaggaatagtccatattttgaaaac 855685  T
Q  267 tttttacaaataatggacacttttagtcct 296  Q
    |||||||||| |||| | | ||||||||||    
T  855686 tttttacaaaaaatgaatatttttagtcct 855715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 35954224 - 35954383
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||||||| ||| ||||||| || |||||||||||| |||||||| ||||| |||||| |||| |||||| ||||||||||||    
T  35954224 taaatatgtttttagtccctataaa-tcacaagttttaaagtttagtccctattaaattttaatggtaattttagtcctcaataatattgtagtttgtaa 35954322  T
Q  245 aaatagttcatattttaaaaacttttt-acaaataatggacacttttagtccttcaaaata 304  Q
     ||||||   |||| ||||| |||||| | ||| | || | |||||||||||| |||||||    
T  35954323 gaatagtctctattataaaatctttttaataaaaattgaaaacttttagtcctccaaaata 35954383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 315
Target Start/End: Complemental strand, 31994888 - 31994722
Alignment:
Q  149 tatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaat 248  Q
    |||||||||||| |||| ||||||| || ||||||| |||| ||||| |||||||||| | ||| ||||||  ||| |||||| |||| ||||||| |||    
T  31994888 tatgtttttagtccctacaaaatcacaaatttttaagtttaatccctttaaaattttaatagtaattttagttctccataatattgtaatttgtaagaat 31994789  T
Q  249 agttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    ||| |  ||||| ||||||||||  ||| ||||||||||| || |||| ||||||| ||| ||||||    
T  31994788 agtcccaattttgaaaactttttttaaaaaatggacacttgtaatcctccaaaatagtccctataaa 31994722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 149 - 304
Target Start/End: Original strand, 8794580 - 8794731
Alignment:
Q  149 tatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaat 248  Q
    |||||||| ||| |||| ||||||| || |||| || |||||||| |||||||||||| ||||| |||||| ||   |||||| |||| || |||| |||    
T  8794580 tatgttttcagtccctacaaaatcacaaattttcaagtttagtcc-tataaaattttaatggtaattttagtcc---ataatattgtaattcgtaagaat 8794675  T
Q  249 agttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 304  Q
    ||| | |||||||||||||||||||||| |||||||| |||||||| | |||||||    
T  8794676 agtccctattttaaaaactttttacaaaaaatggacatttttagtcatccaaaata 8794731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 145 - 304
Target Start/End: Complemental strand, 30641194 - 30641034
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| || ||||| |||||||||  ||||||| ||| |||||||| |||||| ||||| ||||   |||| | ||||||||||    
T  30641194 taaatatgtttttagtccctacaatatcatgagtttttaagcttagtccatatgaaattttaatggtatatttagtcctccgaaatattttagtttgtaa 30641095  T
Q  245 aaatagttcatattttaaaaactttttac-aaataatggacacttttagtccttcaaaata 304  Q
    || |||| | |||||| |||||||| ||| ||| |||||| |||||| ||||| |||||||    
T  30641094 aagtagtccctattttgaaaactttatacaaaaaaatggatacttttggtcctccaaaata 30641034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 27694683 - 27694513
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||| ||| |  |||||||| ||||||||| |||| | ||| | ||||||||  |||| |||||  |||| | |||| ||| ||| ||||    
T  27694683 taaatatgtttttaattcttgcaaaatcatgagtttttaagtttaattcctgtcaaattttaaaggtaattttaatcctccaaaatattgtggttcgtaa 27694584  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    || | || | |||||||||||||||||||||| ||| || | |||||||||||| ||||||||| ||||||    
T  27694583 aagtggtccctattttaaaaactttttacaaaaaatagataattttagtccttctaaataatccctataaa 27694513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 39293279 - 39293110
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||| | | || |||||||  | ||| ||  |||| |||||||||||||||| ||||| |||||| |||||| |||| |||| |||||||    
T  39293279 taaatatgtttttaatccatacaaaatcacgaatttctaggtttaatccctataaaattttaatggtaattttagtcctctaaaatattgtaatttgtaa 39293180  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
     |||||||| |||||||||||| ||||  ||| |||||| | ||||| |||| ||||||| ||| ||||||    
T  39293179 taatagttcctattttaaaaacatttt-taaaaaatggatatttttattcctccaaaatagtccatataaa 39293110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 167 - 304
Target Start/End: Original strand, 10077626 - 10077764
Alignment:
Q  167 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 266  Q
    |||||||| |||||| || ||||||||||||||| ||||| ||||| |||||  |||  |||||| |||||||||||| |||||| | |||||| |||||    
T  10077626 aaaatcatgagttttcaagtttagtccctataaa-ttttaatggtaattttaatccttcataatattgtagtttgtaataatagtccctattttgaaaac 10077724  T
Q  267 tttttac--aaataatggacacttttagtccttcaaaata 304  Q
    |||||||  ||| |||||| | |||||||||| |||||||    
T  10077725 tttttacaaaaaaaatggatatttttagtcctccaaaata 10077764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 24490721 - 24490617
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| ||||| ||  |||||||| ||||||| ||||||||||||| | ||| |||||| |||||| |||| ||||||||||||    
T  24490721 taaatatgtttttagtccctacaaaattatgtgtttttaagtttagtctctataaaattttaatagtaattttagtcctctacaatattgtagtttgtaa 24490622  T
Q  245 aaata 249  Q
     ||||    
T  24490621 gaata 24490617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 145 - 295
Target Start/End: Complemental strand, 29242730 - 29242582
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||| ||||||||| |||| ||||| |  |||||| || ||||||||||||||||||||| ||||| |||||| |||| |  ||| | ||||||||||    
T  29242730 taaatacgtttttagtccctacaaaattaggagttttcaagtttagtccctataaaattttaatggtaattttagtcctcgaagatattatagtttgtaa 29242631  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtcc 295  Q
     |||||| | ||||||   | ||||||||||| ||| || |||||||||||    
T  29242630 gaatagtccctatttt--gacctttttacaaaaaatcgatacttttagtcc 29242582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 30632676 - 30632591
Alignment:
Q  175 aagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatatttt 260  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||| | |  |||||| ||||||||||| ||||||| | ||||||    
T  30632676 aagtttttaattttagtctctataaaattttaatggtaattttagtcttggataatattgtagtttgtacaaatagtccctatttt 30632591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 30669145 - 30669060
Alignment:
Q  175 aagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatatttt 260  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||| | |  |||||| | ||||||||| ||||||| | ||||||    
T  30669145 aagtttttaattttagtctctataaaattttaatggtaattttagtcttgaataatattatagtttgtacaaatagtccctatttt 30669060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 36773985 - 36774085
Alignment:
Q  146 aaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaa 245  Q
    |||||||||||||||||||| ||| ||| |||||||| || ||||| ||||||| |||||| ||||| |||||  ||||| | ||| |||| ||||||||    
T  36773985 aaatatgtttttagttcctacaaactcacaagttttt-atgttagttcctataagattttaatggtaattttaatcctctgtgatattgtaatttgtaaa 36774083  T
Q  246 aa 247  Q
    ||    
T  36774084 aa 36774085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 37284351 - 37284290
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttta 206  Q
    ||||||| |||||||| | || ||||| || ||||||||| |||||||||||||||||||||    
T  37284351 taaatatatttttagtccttacaaaattatgagtttttaagtttagtccctataaaatttta 37284290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 304
Target Start/End: Complemental strand, 434690 - 434530
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctat-aataatgtagtttgta 243  Q
    ||||||||||||||| || ||| ||| || |  ||||||| |||||||  |||||||||||| ||||  |||||| ||| | | |||| |  ||||||||    
T  434690 taaatatgtttttagatcttatcaaagcacacatttttaagtttagtcaatataaaattttaatggtgattttagtcctttgtaaatatttaagtttgta 434591  T
Q  244 aaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 304  Q
    | |||||| ||| |||| ||||||||||  ||| |||||| | |||| ||||| |||||||    
T  434590 agaatagtccatcttttcaaaactttttctaaaaaatggatatttttcgtcctccaaaata 434530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 21595025 - 21595085
Alignment:
Q  255 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    |||||| ||||||||||||||| ||| || | |||| ||||| ||||||||||||||||||    
T  21595025 tattttgaaaactttttacaaaaaatagatatttttggtcctccaaaataatccttataaa 21595085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 11711316 - 11711255
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttta 206  Q
    ||||||| |||||||||  ||||||||||  || ||| || |||||||||||||||||||||    
T  11711316 taaatatatttttagtttttataaaatcacgagctttcaagtttagtccctataaaatttta 11711255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 17448957 - 17448896
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttta 206  Q
    |||||||||||||| | |||||||||| || ||||||||| ||||||   ||||||||||||    
T  17448957 taaatatgtttttaatccctataaaattatgagtttttaagtttagtttttataaaatttta 17448896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 33912690 - 33912766
Alignment:
Q  246 aatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaatataaata 323  Q
    |||||||| |||||||| ||||||||| ||||| || | ||| ||| |||||||||||| || || ||||||||||||    
T  33912690 aatagttcttattttaacaactttttaaaaata-tgaatactattattccttcaaaatagtctttgtaaatataaata 33912766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 43910163 - 43910224
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaatttta 206  Q
    ||||||| |||  ||| |||| |||||||||||||||||| |||| | ||||||||||||||    
T  43910163 taaatatatttggagtccctacaaaatcataagtttttaagtttaattcctataaaatttta 43910224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 14201376 - 14201328
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtcc 193  Q
    |||||||||||||||| ||||||||||||  | ||| ||||||||||||    
T  14201376 taaatatgtttttagtccctataaaatcaggactttctaattttagtcc 14201328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 25067651 - 25067810
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||| |  ||| |||||||||| ||||||| ||| ||  ||||||||||||| ||||| |||||  |||| |||||| | ||||||||||    
T  25067651 taaatatgtttttaatctctacaaaatcataaatttttaagtttggtttctataaaattttaatggtaattttaatcctccataatattatagtttgtaa 25067750  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 304  Q
    ||||||| | |||||| |||||| |||||||| |||||| |||||||||| | |||||||    
T  25067751 aaatagtccttattttgaaaactgtttacaaaaaatggatacttttagtcttccaaaata 25067810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 27567835 - 27567663
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||||| |||||||| |||| |||||||| |||||| || |||| |||||||||||||||| ||||| |||||| |||  |||||| ||||||||||||    
T  27567835 taaatatatttttagtccctacaaaatcatgagttttaaagtttattccctataaaattttaatggtaattttagtcctacataatattgtagtttgtaa 27567736  T
Q  245 aaatagttcatattttaaaaacttttt--acaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
     |||||| | |||||| ||||||||||  | ||| || | | | |||||||||| ||||||| ||||||||||    
T  27567735 gaatagtccttattttgaaaactttttgcaaaaaaaaagtatatttttagtcctccaaaatagtccttataaa 27567663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 11297757 - 11297917
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||| | |||| ||||| || |||||||||  ||||| ||||| |||||||| ||||| |||||| |||| | |||| | ||||||||||    
T  11297757 taaatatgtttttattccctacaaaataatgagtttttaagcttagttcctatgaaattttaatggtaattttagtcctccaaaatattttagtttgtaa 11297856  T
Q  245 aaatagttcatattttaaaaactttttac-aaataatggacacttttagtccttcaaaata 304  Q
    ||||||| | |||||| |||||||| ||| ||| |||||| |||||||||||| |||||||    
T  11297857 aaatagtccctattttgaaaactttatactaaaaaatggatacttttagtcctccaaaata 11297917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 34471227 - 34471327
Alignment:
Q  150 atgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaata 249  Q
    ||||||||||| |||| ||||||| ||| |||||| ||||||||||||||||||||| ||||| |||||| |||| | |||| |||||||||||| ||||    
T  34471227 atgtttttagtccctacaaaatcacaagcttttaagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagtttgtaataata 34471326  T
Q  250 g 250  Q
    |    
T  34471327 g 34471327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 315
Target Start/End: Original strand, 20132053 - 20132223
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||||| ||| || ||||||||| ||||||  | ||||||||||| | ||| |||||| |||  | |||| | || |||||||    
T  20132053 taaatatgtttttagtccctatataattatgagtttttaagtttagtttcaataaaattttaattgtaattttagtcctaaaaaatattataatttgtaa 20132152  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
     ||||||   | |||| ||||||||||||||| |||||| || ||||||||| ||||||| ||| ||||||    
T  20132153 gaatagtctctgttttgaaaactttttacaaaaaatggatacctttagtcctccaaaatagtccctataaa 20132223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 167 - 315
Target Start/End: Original strand, 28098553 - 28098700
Alignment:
Q  167 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaac 266  Q
    |||||||| ||||||||| ||| |||  |||||||||||| ||||| |||||| |||| ||||||  |||||||||| ||||| | |||||||| |||||    
T  28098553 aaaatcatgagtttttaagtttggtctttataaaattttaatggtaattttagtcctcgataata--gtagtttgtagaaataatccatattttgaaaac 28098650  T
Q  267 -tttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
     |||||||||| |||| | | |||||||||| ||||||| ||| ||||||    
T  28098651 ttttttacaaaaaatgaatatttttagtcctccaaaatagtccctataaa 28098700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 13009480 - 13009377
Alignment:
Q  199 aaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaataa-tggacacttttagtcctt 297  Q
    |||||||| ||||| |||||| ||||||||||| |||||||||||| ||||||   |||||||| ||||||||||||| || || | ||||||||||||     
T  13009480 aaattttaatggtaattttagtcctctataatattgtagtttgtaagaatagtcgttattttaataactttttacaaaaaagtgaatacttttagtcctc 13009381  T
Q  298 caaa 301  Q
    ||||    
T  13009380 caaa 13009377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 276
Target Start/End: Complemental strand, 30851797 - 30851674
Alignment:
Q  153 tttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagtt 252  Q
    ||||||||||||||||||| |  |||||| || |||||  |||||||||||||| ||||| ||||||   || |||||| || ||||||||| ||||||     
T  30851797 tttttagttcctataaaattaagagttttcaactttagatcctataaaattttaatggtaattttagttttccataatattgaagtttgtaagaatagtc 30851698  T
Q  253 catattttaaaaactttttacaaa 276  Q
    | ||||||||||| |||| |||||    
T  30851697 cctattttaaaaaattttgacaaa 30851674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 315
Target Start/End: Original strand, 12925246 - 12925382
Alignment:
Q  179 ttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaata 278  Q
    |||||| |||||| |||||||||||||| || || ||||||  ||| | || | | || ||| ||| |||| | | |||||| ||||||||||||||| |    
T  12925246 ttttaagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatccttatttttaaaactttttacaaaaa 12925345  T
Q  279 atggacacttttagtccttcaaaataatccttataaa 315  Q
    || || | |||||||||| ||||||||||||||||||    
T  12925346 atagatatttttagtcctccaaaataatccttataaa 12925382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 21367169 - 21367255
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataata 231  Q
    |||||||||||||||  |||||||||| || ||||||||| |||||||  |||||||||||| ||||| |||||  |||| ||||||    
T  21367169 taaatatgtttttagcccctataaaattatgagtttttaaatttagtctttataaaattttaatggtaattttaatcctccataata 21367255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 276
Target Start/End: Complemental strand, 28565170 - 28565079
Alignment:
Q  185 ttttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaa 276  Q
    ||||||| | |||||||||||| |  || |||||| ||| |||||||||||||||| ||||||||||   |||||| |||||| ||||||||    
T  28565170 ttttagttcttataaaattttaataataattttagtcctttataataatgtagtttataaaaatagtctctattttgaaaactctttacaaa 28565079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 28555280 - 28555354
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttag 219  Q
    ||||||||||||||||  ||| |||||| | | ||||||| |||||||| |||||||||||| ||||| ||||||    
T  28555280 taaatatgtttttagtctctacaaaatcgtgattttttaagtttagtccatataaaattttaatggtaattttag 28555354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 28545287 - 28545217
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtattt 215  Q
    |||||||||||||||| |||| |||||||||| |||| || | ||||  ||||||||| ||| ||||||||    
T  28545287 taaatatgtttttagtccctacaaaatcataaattttaaagtgtagtttctataaaatattaatggtattt 28545217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Complemental strand, 38487366 - 38487338
Alignment:
Q  353 gactaaacttaaaaatttgtaattttgta 381  Q
    |||||||||||||||||||||||||||||    
T  38487366 gactaaacttaaaaatttgtaattttgta 38487338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 145 - 276
Target Start/End: Complemental strand, 5634 - 5503
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| |||||||| |||||||||  || |||||||| |||||||| |||||| ||||| |||| | |||| | ||||||||||    
T  5634 taaatatgtttttagtccctacaaaatcatgagtttttaagcttggtccctatgaaattttaatggtatatttagtcctccaaaatattttagtttgtaa 5535  T
Q  245 aaatagttcatattttaaaaactttttacaaa 276  Q
    || |||| | |||||| |||||||| ||||||    
T  5534 aagtagtccctattttgaaaactttatacaaa 5503  T

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Target: scaffold0020 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 304
Target Start/End: Complemental strand, 152339 - 152180
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    ||||||||||| |||| |||||||||| || | |||| || |||||||  |||||||||||| ||||| |||||| |||  |||||| ||||| ||||||    
T  152339 taaatatgtttgtagtccctataaaattatgaattttcaagtttagtctttataaaattttaatggtaattttagtccttcataatattgtagattgtaa 152240  T
Q  245 aaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaata 304  Q
     |||||| | |||||| ||||||| || |||| |||| | | |||||||| |||||||||    
T  152239 gaatagtccctatttttaaaacttcttgcaaaaaatgaatatttttagtctttcaaaata 152180  T

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Target: scaffold0233 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 315
Target Start/End: Complemental strand, 17099 - 16922
Alignment:
Q  138 aaaagggtaaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtag 237  Q
    |||||| |||||||||||||||| ||||||||||||  |||||| |  |||| |||||||||||||||| ||||| |||||| |||  | ||||  | |     
T  17099 aaaaggttaaatatgtttttagtccctataaaatcacgagttttcaggtttaatccctataaaattttaatggtaattttagtcctacaaaatatagcaa 17000  T
Q  238 tttgtaaaaatagttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    ||||||| |||||| | |||||| ||||| |||||| || |||| | || |||||||||  |||||| ||| ||||||    
T  16999 tttgtaagaatagtccctattttgaaaacgttttactaaaaatgtatacctttagtcctctaaaatagtccctataaa 16922  T

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Target: scaffold0005 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 315
Target Start/End: Complemental strand, 253909 - 253745
Alignment:
Q  150 atgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaata 249  Q
    ||||||||| |||||||||||| || ||||||||| |||||| | |||||||||||| | ||| |||||| ||| || |||| | ||||||||||  |||    
T  253909 atgtttttaattcctataaaattatgagtttttaagtttagttcatataaaattttaatagtaattttagtcctttaaaatattatagtttgtaaggata 253810  T
Q  250 gttcatattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    ||   |||||| |||  |||||||||| |||||| ||||||| |||| ||||||| ||| ||||||    
T  253809 gtctctatttt-aaacttttttacaaaaaatggatacttttaatcctccaaaatagtccctataaa 253745  T

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Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 33276 - 33216
Alignment:
Q  255 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    |||||| ||||||||||||||| ||| || | |||| ||||| ||||||||||||||||||    
T  33276 tattttgaaaactttttacaaaaaatagatatttttggtcctccaaaataatccttataaa 33216  T

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Target: scaffold0478 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 145 - 260
Target Start/End: Original strand, 8599 - 8714
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaa 244  Q
    |||||||||||||||| |||| |||||||| |||||||||  |||||||| || |||||||| ||||| |||||| |||| | |||| |  ||||||| |    
T  8599 taaatatgtttttagtccctaaaaaatcatgagtttttaagcttagtcccaatgaaattttaatggtaattttagtcctccaaaatatttaagtttgtta 8698  T
Q  245 aaatagttcatatttt 260  Q
    ||||||| | ||||||    
T  8699 aaatagtccctatttt 8714  T

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Target: scaffold0478; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 3221 - 3300
Alignment:
Q  145 taaatatgtttttagttcctataaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctc 224  Q
    |||||||||||||||| |||| |||||||| |||||||||  ||| ||||||| |||||||| ||||| |||||| ||||    
T  3221 taaatatgtttttagtccctacaaaatcatgagtttttaagcttaatccctatgaaattttaatggtaattttagtcctc 3300  T

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Target: scaffold1911 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 260
Target Start/End: Original strand, 2 - 95
Alignment:
Q  167 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatatttt 260  Q
    |||||||| |||||||||  ||||||||||| |||||||| ||||| |||||| |||| | |||| |  ||||||| |||||||| | ||||||    
T  2 aaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctccaaaatatttaagtttgttaaaatagtccctatttt 95  T

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Target: scaffold0264 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 19873 - 19788
Alignment:
Q  167 aaaatcataagtttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagtt 252  Q
    |||||||| | ||||||  |||||||||||||||||||||  |||| |||||| | || | |||| ||||||| ||||||||||||    
T  19873 aaaatcatgaatttttatgtttagtccctataaaattttaacggtaattttagtcgtcgaaaatattgtagttagtaaaaatagtt 19788  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 315
Target Start/End: Complemental strand, 363207 - 363071
Alignment:
Q  179 ttttaattttagtccctataaaattttagtggtatttttagccctctataataatgtagtttgtaaaaatagttcatattttaaaaactttttacaaata 278  Q
    |||||| |||||| |||||||||||||| || || ||||||  ||| | || | | || ||| ||| |||| | | |||||| | ||||||||||||| |    
T  363207 ttttaagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatccttatttttagaactttttacaaaaa 363108  T
Q  279 atggacacttttagtccttcaaaataatccttataaa 315  Q
    || || | |||||||||| |||| |||||||||||||    
T  363107 atagatatttttagtcctccaaagtaatccttataaa 363071  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 360604 - 360544
Alignment:
Q  255 tattttaaaaactttttacaaataatggacacttttagtccttcaaaataatccttataaa 315  Q
    |||||| ||||||||||||||| ||| || | |||| ||||| |||||||||| |||||||    
T  360604 tattttgaaaactttttacaaaaaatagatatttttggtcctccaaaataatctttataaa 360544  T

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