View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9360_low_9 (Length: 442)
Name: NF9360_low_9
Description: NF9360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9360_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 16004842 - 16004683
Alignment:
| Q |
8 |
tggtggtccaatattatacgaaacatgtgtttgcgtaatggtgaaaggtgctccttgtcaagtgcgcgggtgcccggggaacacacctcctgctgccgtt |
107 |
Q |
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| T |
16004842 |
tggtggtccaatattatacgaaacatgtgtttgcgtaatggtgaaaggtgctccttgtcaagtgcgcgggtgccctgggaacacacctcctgccgccgtt |
16004743 |
T |
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| Q |
108 |
gcttccaactacaatcaaactcaattcatgaaatatttgaatgttacagcttaaatatga |
167 |
Q |
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| T |
16004742 |
gcttccaactacaatcaaactcaattcatgaaatatttgaatgttacagcttaaatatga |
16004683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 163 - 358
Target Start/End: Complemental strand, 16004601 - 16004408
Alignment:
| Q |
163 |
tatgagtttttgtgctgaggatatatgcatgatgctttattgtaatattgatgtataagaattttcatgtacgcaacataagtacatagcataaaatgtc |
262 |
Q |
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| T |
16004601 |
tatgagtttttgtgctgaggatatatgcatgatgctttattgtaatattgatgtataaaaattttcatgtacacaacataagtacataacataaaatgtc |
16004502 |
T |
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| Q |
263 |
ttcttctttttcctttcnnnnnnnnnnnnnnntaacatttcttcttaacaaacctttctacaaactgcgcacataagagaaggaaagtgtctgcaa |
358 |
Q |
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| T |
16004501 |
ttcttctttttcctttcaaaaaaattaaaaaataacatgtcttcttgacaaacctttctacaaact--gcacataaaagaagaaaagtgtctgcaa |
16004408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 16003858 - 16003788
Alignment:
| Q |
356 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttacc |
426 |
Q |
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| T |
16003858 |
caaacgtaaacaccctcttcttcttttattctctagctgtctttttcccatgcttttctatagctcttacc |
16003788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 26795241 - 26795168
Alignment:
| Q |
356 |
caaacgtaaacaccctcttcttctt---ttgttctctagctgtctttttcccatgcttttctatagctcttacc |
426 |
Q |
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| T |
26795241 |
caaacgtaaacaccctcttcttcttcttttgttctctagctgtctttttcccatgcttttctacagctgttacc |
26795168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 40722202 - 40722132
Alignment:
| Q |
356 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttacc |
426 |
Q |
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| T |
40722202 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttacc |
40722132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 48819005 - 48818849
Alignment:
| Q |
13 |
gtccaatattatacgaaacatgtgtttgcgtaatggtgaaaggtgctccttgtcaagtgcgcgggtgcccggggaacacacctcctgctgc------cgt |
106 |
Q |
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| T |
48819005 |
gtccaatgttatacgaaacatgtgtttgtgaaatggtgaacggtgctccctgtcaagttcgtggatgtccggggaacacacctcctgctgctgcctttgc |
48818906 |
T |
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| Q |
107 |
tgcttccaactacaatcaaactcaattcatgaaatatttgaatgttacagcttaaat |
163 |
Q |
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| T |
48818905 |
tgctgccaactacactgaacctcatttcatgaaatatttgaatgttacaacttaaat |
48818849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 356 - 426
Target Start/End: Original strand, 27221880 - 27221950
Alignment:
| Q |
356 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttacc |
426 |
Q |
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| T |
27221880 |
caaacgtaaacaacctcttcttcttttgttctctagctgtctttttcccatgcttttctgcagctcttacc |
27221950 |
T |
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