View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_high_1 (Length: 518)
Name: NF9361A_high_1
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 24 - 411
Target Start/End: Complemental strand, 20598004 - 20597615
Alignment:
| Q |
24 |
aacaattcattggcatccttgtttcttctcttttttggtctaccaggttgnnnnnnn--atgggtggtggctgaagattagtgtactcagtcctttgcca |
121 |
Q |
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| T |
20598004 |
aacaattcattggcatccttgtttcttctcttttttggtctaccaggttgtttttttttatgggtggtggctgaagatcagtgtactcagtcctttgcca |
20597905 |
T |
|
| Q |
122 |
taaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtccttcatgaagatatctggaacaaagtcaaatatgttcatgtcg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20597904 |
taaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtccttcatgaagatatctggaacaaagtcaaatatgttcatgtcg |
20597805 |
T |
|
| Q |
222 |
aacttcttcatacatgaaatagcatgacagcagggcaatcctattagtagccatttcctgcagtcacaagaccatctttgcaggttgacatgaaacttgt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20597804 |
aacttcttcatacatgaaatagcatgacagcagggcaatcctgttagtagccatttcctgcagtcacaagaccatctttgcaggttgacatgaaacttgt |
20597705 |
T |
|
| Q |
322 |
caccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaatataacatttcataaaattaatatcactactaa |
411 |
Q |
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| T |
20597704 |
caccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaatataacatttcataaaattaatatcactactaa |
20597615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 421 - 503
Target Start/End: Complemental strand, 20597514 - 20597432
Alignment:
| Q |
421 |
tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacactctgatgtcc |
503 |
Q |
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| T |
20597514 |
tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacactctgatgtcc |
20597432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 24 - 409
Target Start/End: Complemental strand, 8699003 - 8698618
Alignment:
| Q |
24 |
aacaattcattggcatccttgtttcttctcttttttggtctaccaggttgnnnnnnnatgggtggtggctgaagattagtgtactcagtcctttgccata |
123 |
Q |
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| T |
8699003 |
aacaattcattagcatccttgtttcttctcttttttggtctaccaggttgttttttgatgggtggtggctgaagatcagtgtactcagtcctttgccata |
8698904 |
T |
|
| Q |
124 |
aactttgaccattagctggataaatggaactactgtaacatgctacatatttgtccttcatgaagatatctggaacaaagtcaaatatgttcatgtcgaa |
223 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8698903 |
aactttgaccattagccggataaatggaactagagtaacatgctacatatttgtccttcatgaagatatctggaacaaagtcaaatatgttcatgtcgaa |
8698804 |
T |
|
| Q |
224 |
cttcttcatacatgaaatagcatgacagcagggcaatcctattagtagccatttcctgcagtcacaagaccatctttgcaggttgacatgaaacttgtca |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8698803 |
cttcttcatacatgaaatagcatgacagcagggcaatcctgttagtaaccatttcctgcagtcacaagaccatctttgcaggttgacatgaaacttgtga |
8698704 |
T |
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| Q |
324 |
ccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaatataacatttcataaaattaatatcactact |
409 |
Q |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
8698703 |
ccagttaaagaaacatgtctaacttcataatcaaactcatttgcacgcctacaaatataacatttcataaaattagtatcgctact |
8698618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 421 - 500
Target Start/End: Complemental strand, 8698514 - 8698435
Alignment:
| Q |
421 |
tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacactctgatg |
500 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8698514 |
tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacactctgatg |
8698435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 455 - 496
Target Start/End: Original strand, 37101837 - 37101878
Alignment:
| Q |
455 |
tttctgcctgtttgcttcccatctctccatcaagtacactct |
496 |
Q |
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| T |
37101837 |
tttctgcctatttgcttcccatctctccatcaggtacactct |
37101878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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