View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_high_11 (Length: 430)
Name: NF9361A_high_11
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 22 - 421
Target Start/End: Complemental strand, 77833 - 77434
Alignment:
| Q |
22 |
tttacaaccctcactaaactcaaacaattgtaagtgtaaccatacttgtggtaaggagttgagggagaagctattatttcattannnnnnnnnnnnggag |
121 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
77833 |
tttacgaccctcactaaactcaaacaattgtaagtgtaaccatacttgtggtaaggagttgagggagaagctattatttcattatttattttttttggag |
77734 |
T |
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| Q |
122 |
tactataattcatattttcatatatgacttctgccacttttattttatatactatatgaaaatggtccttctttgtatttaggtatgtatttggaacatc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77733 |
tactataattcatattttcatatatgacttctgccacttttattttatatactatatgaaaatggtccttctttgtatttaggtatgtatttggaacatc |
77634 |
T |
|
| Q |
222 |
agttataagcttctctctttcttatttggtttcttagtatcatcatacattaaatttctatcgactgttaatcattacaatatagggatgtatcattcaa |
321 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77633 |
agttataagcttttctctttcttatttgctttcttagtatcatcatacattaaatttctatcgactgttaatcattacaatatagggatgtatcattcaa |
77534 |
T |
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| Q |
322 |
ttcactgtcaggagaactgcctcagagtttgaaatcagcaacgagcctcaagaagatgtaagaaatgaatcactatcactgttaaggaacacacccacac |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
77533 |
ttcactgtcaggagaactgcctcagagtttgaaatcagcaacgagcctcaagaagatgtaagaaatgaatcactatcactgttaaggaacacacacacac |
77434 |
T |
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