View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9361A_high_13 (Length: 423)
Name: NF9361A_high_13
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 32164879 - 32164486
Alignment:
| Q |
19 |
catcattaatacgtttctttatattaagtaaactcttagagtcaagtcttcaagtcgagtatatgaaagctcaatgagttattattgactctcgagctag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32164879 |
catcattaatacgtttctttatattaagtaaactcttagagtcaagtcttcaagtcgagtatatgaaagctcaatgagttattattgactctcgagctag |
32164780 |
T |
|
| Q |
119 |
acaatcttgcttctaccacaaggccatttactaactctgctgatcttttggtcactttacctcctcggacccatcagctcctgccaagctcttcgattct |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |
|
|
| T |
32164779 |
acaatcttgcttctactacaaggccatttactaactctgctgatcttttggtcactttacctcctcgaacccatcagcttctgccaagctcttcgaatct |
32164680 |
T |
|
| Q |
219 |
tatgcctgaacggttatctccagctttacaagactcaatttcagaacatgcacatctgcggtagggtgattataaaaccagtccagctgcttgttaagaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32164679 |
tatgcctgaacggttatctccagctttacaagactcattttcagaacatgcacatctccggtagggtgattataaaaccagtccagctgcttgttaagaa |
32164580 |
T |
|
| Q |
319 |
ggtaatttttctttatgatcacacacgatcatgaaaaaagtagatatgatcaaactgccacattgacatgtgtagtattgttgatgtccatctc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32164579 |
ggtaatttttctttatgatcacacacgatcatgagcaaagtagatatgatcaaactgccacattgacatgtgtagtattgttgacgtccatctc |
32164486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University