View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9361A_high_15 (Length: 402)
Name: NF9361A_high_15
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 3790165 - 3789761
Alignment:
| Q |
1 |
ttgcgaagcccccttcaactttagagatattgttgaaacgttgatcgtagtac----tatacatatgacttgtaatattgtaaaccttaactcactcaag |
96 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3790165 |
ttgcgaagctcccttcaactttagatctattgttgaaacgtggatcgtagtaccatatatacatatgacttgtaatattgtaaaccttaactcactcaag |
3790066 |
T |
|
| Q |
97 |
tagtatatcaaactactgctactctttagtcgcagtggtaggcatacacgtggctgaattgcataaacaattgatcatgttccattgtttgtgatatatg |
196 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3790065 |
tagtatatcgaactactgctactctttagtcgcagtggtaggcatacacgtggctgaattgcataaagaattgatcatgttccattgtttgtgatatatg |
3789966 |
T |
|
| Q |
197 |
tttctatactcttttgttactaatttccgatataacataatttcgagctgaggttgagattaac--atagaatacttcatgatctccttttcgcattgta |
294 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3789965 |
tttctatactcttttgttactaatttctgatgtaacataatttcgagcttaggttgagattaacatatagaatacttcatgatctccttttcgcattgta |
3789866 |
T |
|
| Q |
295 |
ggaaatcccaccaaaaaacaagaaattcaaatctcccctgatatacctatgatgaacacaacaaacttcccatggcgcggcgtagataagatcttctttg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789865 |
ggaaatcccaccaaaaaacaagaaattcaaatctcccctgatatacctatgatgaacacaacaaacttcccatggcgcggcgtagataagatcttctttg |
3789766 |
T |
|
| Q |
395 |
atcat |
399 |
Q |
| |
|
||||| |
|
|
| T |
3789765 |
atcat |
3789761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 174 - 401
Target Start/End: Original strand, 3800118 - 3800345
Alignment:
| Q |
174 |
tgttccattgtttgtgatatatgtttctatactcttttgttactaatttccgatataacataatttcgagctgaggttgagattaacatagaatacttca |
273 |
Q |
| |
|
|||| |||||||| |||| | ||| ||| || ||||||||||||| || || ||||||||||||||||| ||||||| | ||||| |||| |||| |
|
|
| T |
3800118 |
tgtttcattgtttatgatttctgtctctttaatcttttgttactagttgttgaggtaacataatttcgagctttggttgagttcaacatcaaatatttca |
3800217 |
T |
|
| Q |
274 |
tgatctccttttcgcattgtaggaaatcccaccaaaaaacaagaaattcaaatctcccctgatatacctatgatgaacacaacaaacttcccatggcgcg |
373 |
Q |
| |
|
||||||| |||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| | |
|
|
| T |
3800218 |
tgatctcgttttggcattgcaggaaatccaaccaaaaaacaagaaattcaaatctccccggatatacctatgatggacacaacaaacatcccatggcgtg |
3800317 |
T |
|
| Q |
374 |
gcgtagataagatcttctttgatcatat |
401 |
Q |
| |
|
|||||||||||||||| |||||| |||| |
|
|
| T |
3800318 |
gcgtagataagatcttatttgataatat |
3800345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 34940209 - 34940260
Alignment:
| Q |
46 |
cgtagtactatacatatgacttgtaatattgtaaaccttaactcactcaagt |
97 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
34940209 |
cgtagtactatatatatggcttgtaactttgtaaaccttaattcactcaagt |
34940260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 8808245 - 8808196
Alignment:
| Q |
54 |
tatacatatgacttgtaatattgtaaaccttaactcactcaagtagtata |
103 |
Q |
| |
|
|||| ||||||||||||| | |||||||| ||||||||||||||| |||| |
|
|
| T |
8808245 |
tatatatatgacttgtaacaatgtaaaccctaactcactcaagtaatata |
8808196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 38970059 - 38970131
Alignment:
| Q |
32 |
gttgaaacgttgatcgtagtactatacatatgacttgtaatattgtaaaccttaactcactcaagtagtatat |
104 |
Q |
| |
|
|||| ||| |||| |||||||||||| |||| ||||||| | |||||||| ||| ||||||||||| ||||| |
|
|
| T |
38970059 |
gttgtaactttgaacgtagtactatatctatggcttgtaacactgtaaaccctaattcactcaagtaatatat |
38970131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University