View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_high_36 (Length: 262)
Name: NF9361A_high_36
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_high_36 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 51254534 - 51254302
Alignment:
| Q |
7 |
tcgaagaatatagggcaaaaagtgccttgttgttgtttgagaacgcagtttgtgcagaaacgacggttgatggctctgtaggtgatagtgtggaggaaga |
106 |
Q |
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| T |
51254534 |
tcgaagcaaatagggcaaaaagtgccttgttgttgtttgagaacgcagtttgtgcagaaacgacggttgatggctctgtaggtgatagtgtggaggaaga |
51254435 |
T |
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| Q |
107 |
gagaggttgtcggtgtgaagccgcaacagttgcatggctccggtgaggattggaagggattcatcggaatggcattggatagggcttcgtacgtggattg |
206 |
Q |
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| T |
51254434 |
gagaggttgtcggtgtgaagccgcaacagtcgcatggctccggtgaggattggaagggattcatcggaatggcattggatagggcttcgtacgtggattg |
51254335 |
T |
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| Q |
207 |
tcttaacggtaaccctagaaatgtagtgagagt |
239 |
Q |
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| T |
51254334 |
tcttaacggtaaccctagaaatgtagtgagagt |
51254302 |
T |
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Target: scaffold0246 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 11863 - 11764
Alignment:
| Q |
16 |
atagggcaaaaagtgccttgttgttgtttgagaacgcagtttgtgcagaaacg-acggttgatggctctgtaggtgatagtgtggaggaagagagaggtt |
114 |
Q |
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| T |
11863 |
atagggaaagaagtgccttgttgttgtttgagaacgcaatttgtgcagaaacgaacatttgatggctctgttggtgatggcgtggaggatgagagaggtt |
11764 |
T |
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