View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_high_4 (Length: 483)

Name: NF9361A_high_4
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_high_4
NF9361A_high_4
[»] chr6 (2 HSPs)
chr6 (1-462)||(9538728-9539189)
chr6 (228-278)||(2445291-2445341)
[»] chr5 (3 HSPs)
chr5 (212-278)||(38756722-38756788)
chr5 (211-259)||(30488936-30488984)
chr5 (232-268)||(42608888-42608924)
[»] chr7 (3 HSPs)
chr7 (210-277)||(29726793-29726860)
chr7 (238-267)||(26980965-26980994)
chr7 (207-267)||(5458069-5458129)
[»] chr8 (2 HSPs)
chr8 (210-264)||(13284266-13284320)
chr8 (210-267)||(40167325-40167382)
[»] chr2 (1 HSPs)
chr2 (210-268)||(9547410-9547468)
[»] chr1 (6 HSPs)
chr1 (232-278)||(4896633-4896679)
chr1 (233-267)||(15382843-15382877)
chr1 (233-266)||(5553025-5553058)
chr1 (210-267)||(10841903-10841960)
chr1 (207-267)||(3777721-3777781)
chr1 (241-277)||(41032924-41032960)
[»] scaffold0008 (1 HSPs)
scaffold0008 (231-280)||(119559-119608)


Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 9538728 - 9539189
Alignment:
Q  1 atgctttgataaaggaacttagttgaagagtgaatataatgggactaaattttttgaagtgtgtggtttacttaatttttggattcttttcttttataac 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9538728 atgctttgataaagggacttagttgaagagtgaatataatggtactaaattttttgaagtgtgtggtttacttaatttttggattcttttcttttataac 9538827  T
Q  101 aaggcctctccatgtgtcaatcatttttt-gataagggaaatatgtagattctgtcgtagtagctacaaggagaactatcacatgtatcannnnnnnnna 199  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| ||              
T  9538828 aaggcctctccatgtgtcaataatttttttgataagggaaatatttagattctgtggtagtagctataaggagaactatcacatgtaccattttttag-- 9538925  T
Q  200 tgatgaccgaggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagctttcgaggacatcacatgcatcagcttatagtt 299  Q
    |||||||||||||||||| |||| ||| | |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  9538926 tgatgaccgaggtttgaaccccagaccttataaatatgatacattgtttataccaactgagttaagctttcgaggacatcacatgcatcagtttatagtt 9539025  T
Q  300 gcagattcttctcacacaaatttttcagtgatatatcaatgttgttggaacattgttcaattatttaaattatgaactaagttcaaatatgattttttaa 399  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9539026 gcagattcttctcacacaaatttttcaatgatatatcaattttgttggaacattgttgaattatttaaattatgaactaagttcaaatatgattttttaa 9539125  T
Q  400 atatacta-nnnnnnnnaactcatgcataagattagaaactcacatttagatttccttgtgtta 462  Q
    ||||||||         |||||||||||||||||||||||||||||||||||||||||||||||    
T  9539126 atatactatttttttttaactcatgcataagattagaaactcacatttagatttccttgtgtta 9539189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 2445341 - 2445291
Alignment:
Q  228 tgtaaatatgatacattgttcatatcaactgagttaagctttcgaggacat 278  Q
    |||| |||| || |||||||||||||||||||||||||||| |||||||||    
T  2445341 tgtatatattatgcattgttcatatcaactgagttaagcttacgaggacat 2445291  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 38756788 - 38756722
Alignment:
Q  212 tttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagctttcgaggacat 278  Q
    |||||| ||| |||| |||| |||| ||||||| ||||||||||||||||||| ||| |||||||||    
T  38756788 tttgaaccccgaaccttgtatatattatacattattcatatcaactgagttaaacttacgaggacat 38756722  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 30488984 - 30488936
Alignment:
Q  211 gtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactga 259  Q
    ||||||| |||||||| |||| |||| || |||||||||||||||||||    
T  30488984 gtttgaaccccaaaccttgtatatattatgcattgttcatatcaactga 30488936  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 42608888 - 42608924
Alignment:
Q  232 aatatgatacattgttcatatcaactgagttaagctt 268  Q
    ||||| || ||||||||||||||||||||||||||||    
T  42608888 aatattatgcattgttcatatcaactgagttaagctt 42608924  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 29726860 - 29726793
Alignment:
Q  210 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagctttcgaggaca 277  Q
    |||||||| ||| |||| || | |||| ||||||||||||| ||||||||||||||||  ||||||||    
T  29726860 ggtttgaaccccgaaccttgcatatattatacattgttcatgtcaactgagttaagctcacgaggaca 29726793  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 26980965 - 26980994
Alignment:
Q  238 atacattgttcatatcaactgagttaagct 267  Q
    ||||||||||||||||||||||||||||||    
T  26980965 atacattgttcatatcaactgagttaagct 26980994  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 5458069 - 5458129
Alignment:
Q  207 cgaggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagct 267  Q
    |||||||||||||||| ||| || | |||| || |||||||| ||||||||||| ||||||    
T  5458069 cgaggtttgaatcccagaccttgcatatattatgcattgttcttatcaactgagctaagct 5458129  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 13284266 - 13284320
Alignment:
Q  210 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaa 264  Q
    |||||||| | |||||| | || |||| |||||||||||||||||||||||||||    
T  13284266 ggtttgaacctcaaaccttatatatattatacattgttcatatcaactgagttaa 13284320  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 40167382 - 40167325
Alignment:
Q  210 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagct 267  Q
    |||||||||||| |||| |||| |||| || |||||| |||| |||||||||||||||    
T  40167382 ggtttgaatcccgaaccttgtatatattatgcattgtccataccaactgagttaagct 40167325  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 9547410 - 9547468
Alignment:
Q  210 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagctt 268  Q
    |||||||| |||||||| || | |||| || |||||| |||||||||||||||||||||    
T  9547410 ggtttgaaccccaaaccttgcatatattatgcattgtccatatcaactgagttaagctt 9547468  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 4896679 - 4896633
Alignment:
Q  232 aatatgatacattgttcatatcaactgagttaagctttcgaggacat 278  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| |||||    
T  4896679 aatattatacattgtccatatcaactgagttaagcttacgaagacat 4896633  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 267
Target Start/End: Original strand, 15382843 - 15382877
Alignment:
Q  233 atatgatacattgttcatatcaactgagttaagct 267  Q
    |||| ||||||||||||||||||||||||||||||    
T  15382843 atattatacattgttcatatcaactgagttaagct 15382877  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 5553025 - 5553058
Alignment:
Q  233 atatgatacattgttcatatcaactgagttaagc 266  Q
    |||| |||||||||||||||||||||||||||||    
T  5553025 atattatacattgttcatatcaactgagttaagc 5553058  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 10841960 - 10841903
Alignment:
Q  210 ggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagct 267  Q
    |||||||||| |||||| | || |||| || |||||| ||||||||||||||||||||    
T  10841960 ggtttgaatctcaaaccttatatatattatgcattgtccatatcaactgagttaagct 10841903  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 3777781 - 3777721
Alignment:
Q  207 cgaggtttgaatcccaaaccgtgtaaatatgatacattgttcatatcaactgagttaagct 267  Q
    ||||||||||| | | |||| |||| |||| ||||||| | ||||||||||||||||||||    
T  3777781 cgaggtttgaacctcgaaccttgtatatattatacattatccatatcaactgagttaagct 3777721  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 41032960 - 41032924
Alignment:
Q  241 cattgttcatatcaactgagttaagctttcgaggaca 277  Q
    |||||||||||||||||||||||||||  ||||||||    
T  41032960 cattgttcatatcaactgagttaagctcacgaggaca 41032924  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 119608 - 119559
Alignment:
Q  231 aaatatgatacattgttcatatcaactgagttaagctttcgaggacatca 280  Q
    |||||| ||||||||| | ||||||||||||||||||  |||||||||||    
T  119608 aaatattatacattgtccctatcaactgagttaagctcacgaggacatca 119559  T

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