View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_high_40 (Length: 247)
Name: NF9361A_high_40
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6315634 - 6315857
Alignment:
| Q |
1 |
gaaatgatatggatttgttactttaaataaacgtttatgtttgcaaggtaaccaaaatttgaaaagcgcaatgaatatccaccacttccatactagaact |
100 |
Q |
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| T |
6315634 |
gaaatgatatggatttgttactttaaataaacgtttatgtttgcaaggtaaccaaaatttgaaaagcgcaatgaatatccaccacttccatactagaact |
6315733 |
T |
|
| Q |
101 |
gtcattagattgttatcttttgcaaaggaagaattgtcattacattatgatcacaaccataccaatgataaaaaagattacagtattggtcacaactcac |
200 |
Q |
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| T |
6315734 |
gtcattagattgttatcttttgcaaaggaagaattgtcattacattatgatcacaaccataccaatgataaaaaagattacagtattggtcacaactcac |
6315833 |
T |
|
| Q |
201 |
aagcatcttgtactataatgttac |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
6315834 |
aagcatcttgtactataatgttac |
6315857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 51819641 - 51819747
Alignment:
| Q |
72 |
tgaatatccaccacttccatactagaactgtcattagattg---ttatcttttgcaaaggaagaattgtcattacattatgatcacaaccataccaatga |
168 |
Q |
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| T |
51819641 |
tgaatatccaccactttcatgctagaactgtatttagattagtattatatttttcaaaggaggaattgtcattacattatgataacaaccgtaccattga |
51819740 |
T |
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| Q |
169 |
taaaaaa |
175 |
Q |
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||||||| |
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| T |
51819741 |
taaaaaa |
51819747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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