View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_high_6 (Length: 452)
Name: NF9361A_high_6
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 10 - 452
Target Start/End: Complemental strand, 430801 - 430368
Alignment:
| Q |
10 |
gaccaatacggtgaccggttctttctcaactttgagaagatcactcatgtatctaatgatcttccaaaacaaaaaagtacaaactaaaacaagaacaatt |
109 |
Q |
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| T |
430801 |
gaccaatacggtgaccggttctttctcaactttgagaagatcactcatgtatctaatgatcttccaaaacaaaaaagtacaaactaaaacaagaacaatt |
430702 |
T |
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| Q |
110 |
ttttgaaggactgttttgtccataatatccaaaccaaacatttccatgttgatcactctttgttaggattctaaggaaacaatctacttcaccatctttt |
209 |
Q |
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| T |
430701 |
ttttgaaggactgttttgtccataatatccaaaccaaacatttccatgtt---cactctttgttaggattctaaggaaacaatctacttcaccatctttt |
430605 |
T |
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| Q |
210 |
tatttaacaagtttgaaaatcaatttaaaattaaagaatcaattcacattactcttgagcaaggcaatcatcatataccagaaccaagtccgcaagaaat |
309 |
Q |
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| T |
430604 |
tatttaacaagtttgaaaatcaatttaaaattaaagaatcaatgcacattactcttgagcaaggcaatcatcatataccagaaccaagtccgcaagaaat |
430505 |
T |
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| Q |
310 |
gcaagtacaagagaataacacgtaccttagcaacaaagaaaagaacnnnnnnnnnnnnnnnnnnnnnatggaatttaatcaacgaataattaattatata |
409 |
Q |
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| T |
430504 |
gcaagtacaagagaataacacgtaccttagcaacaaagaaaagaac------ttttttttttattttatggaattttatcaacgaataattaattatata |
430411 |
T |
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| Q |
410 |
catgcaaatgaaatataaaatcaatattaggaaagaaaaagtt |
452 |
Q |
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| T |
430410 |
catgcaaatgaaatataaaatcaatattaggaaagaaaaagtt |
430368 |
T |
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