View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_106 (Length: 305)

Name: NF9361A_low_106
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_106
NF9361A_low_106
[»] chr8 (1 HSPs)
chr8 (16-305)||(30138258-30138547)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 30138258 - 30138547
Alignment:
Q  16 agagaggagaaacttgaaactttgtttgttttggatttgttgaaggaagaaatcatgagagcaagatggtgagtgtgagatgaacttgcaactgtgctag 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30138258 agagagaagaaacttgaaactttgtttgttttggatttgttgaaggaagaaatcatgagagcaagatggtgagtgtgagatgaacttgcaactgtgctag 30138357  T
Q  116 ctaagactatgaaagcaatgtagggaatgaagattaaggttgttttgaagaatcctgctggaagacagaagaaaactccgatgcctgtggatgctgctgt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30138358 ctaagactatgaaagcaatgtagggaatgaagattaaggttgttttgaagaatcctgctggaagacagaagaaaactccaatgcctgtggatgctgctgt 30138457  T
Q  216 gattagggtttggtattggctgttaaggtggaaagagatgaaagtgaggattggaatggctaaggttaaacctgaagcccatgcaattga 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30138458 gattagggtttggtattggctgttaaggtggaaagagatgaaagtgaggattggaatggctaaggttaaacctgaagcccatgcaattga 30138547  T

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