View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_108 (Length: 300)
Name: NF9361A_low_108
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_108 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 6 - 300
Target Start/End: Original strand, 7874870 - 7875164
Alignment:
| Q |
6 |
actgagatgaatcagtcagatagagtggcaccacctgaggaatacaagtgtccaatatcctcaaggctgatgtatgatcctgttatcattgcttctggag |
105 |
Q |
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| T |
7874870 |
actgagatgaatcagtcagatagagtggcaccacctgaggaatacaagtgtccaatatcctcaaggctgatgcatgatcctgttatcattgcttctggag |
7874969 |
T |
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| Q |
106 |
taacatatgaaagaatgtggataagaaagtggattaatgagggtaaaactatatgtccaaaaacagaaaaggaactgcctcatatgacattgactccaaa |
205 |
Q |
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| T |
7874970 |
taacatatgaaagaatgtggataagaaagtggattaatgagggtaaaactatatgtccaaaaacagaaaaggaactgcctcatatgacattgactccaaa |
7875069 |
T |
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| Q |
206 |
tattgtcatgaaagacttaatatcaaagtggtgcaaaaataatggtgtcaccattcctgatccaagtagacgtacagaagattttatgttgttgg |
300 |
Q |
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| T |
7875070 |
tattgtcatgaaagacttgatatcaaagtggtgcaaaaataatggtgtcaccattcctgatccaagtagacatacagaagattttatgttgttgg |
7875164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 274
Target Start/End: Complemental strand, 32838328 - 32838122
Alignment:
| Q |
68 |
aaggctgatgtatgatcctgttatcattgcttctggagtaacatatgaaagaatgtggataagaaagtggattaatgagggtaaaactatatgtccaaaa |
167 |
Q |
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| T |
32838328 |
aaggttgatgtatgatcctgttgtcattgcttcaggagaaacatacgagcggatgtggatacaaaaatggtttgatgagggtaatgttatatgcccgaaa |
32838229 |
T |
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| Q |
168 |
acagaaaaggaactgcctcatatgacattgactccaaatattgtcatgaaagacttaatatcaaagtggtgcaaaaataatggtgtcaccattcctgatc |
267 |
Q |
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| T |
32838228 |
actaaaaagaaactgctgcatttggcgatgactcctaacgttgctttaaaggaattaatatcaaaatggtgcaaaactaatgacgtctccattcctaatc |
32838129 |
T |
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| Q |
268 |
caagtag |
274 |
Q |
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| T |
32838128 |
caagtag |
32838122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 34511536 - 34511494
Alignment:
| Q |
75 |
atgtatgatcctgttatcattgcttctggagtaacatatgaaa |
117 |
Q |
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| T |
34511536 |
atgtatgatcctgttatcattgcttctgggcaaacatatgaaa |
34511494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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