View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_110 (Length: 298)
Name: NF9361A_low_110
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 292
Target Start/End: Original strand, 998319 - 998602
Alignment:
| Q |
9 |
agcatagaccagaagtcaataatgaaatagcgttgtaaatatcgctttgcgatcaatccaggatctatgacaagttcacctcttccaaatactcgagatg |
108 |
Q |
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| T |
998319 |
agcacagaccagaagtcaataatgaaatagcgttgtaaatatcgctttgcgatcaatccaggatctatgacaagttcacctcttccaaatactcgagatg |
998418 |
T |
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| Q |
109 |
aaggtgcaatgaaggcggtgcggaattggaaacttatgcgaatgagataaataaaatcacatattgttctcaatataacagtaaacttcgctagatcgtt |
208 |
Q |
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| T |
998419 |
aaggtgcaatgaaggcggtgcggaattggaaacttatgcgaatgagataaataaaatcacatattgttctcaatataacagtaaacttcgctagattgtt |
998518 |
T |
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| Q |
209 |
atctatggctaaacaatatgatttgtggttgaaataaggaagatnnnnnnngaaaggatcacaagctacagaaaggatgcatag |
292 |
Q |
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| T |
998519 |
atctatggctaaacaatatgatttgtggttgaaataaggaagataaaaaaagaaaggatcacaagctacagaaaggatgcatag |
998602 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 9549838 - 9549874
Alignment:
| Q |
85 |
cacctcttccaaatactcgagatgaaggtgcaatgaa |
121 |
Q |
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| T |
9549838 |
cacctcttccaaatactcgagaagaaggagcaatgaa |
9549874 |
T |
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