View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_114 (Length: 296)
Name: NF9361A_low_114
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_114 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 34314390 - 34314673
Alignment:
| Q |
7 |
caaaagaggagtattatatcaagtgaacaatttgtttgtgagagttcacgatggttgatattgtaaatatgtttgagaatcagttaatttgtgatcattc |
106 |
Q |
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| T |
34314390 |
caaaagaggagtgttatatcaagcgaacaatttgtttgtgagagttcacgatggttgatattataaatatgtttcggaatcagctaatttgtgatcattc |
34314489 |
T |
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| Q |
107 |
tgtctgaatctctattgtaacttttctgctattttctcttacatactttatgttaaggaaatagtctctttgtttttaatatattccgttttgatttctt |
206 |
Q |
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||| ||||||||||| |||||||||| |||| |||||||||||| |||||| ||||| ||||| ||||| ||| |||||||||| | |||||||||| | |
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| T |
34314490 |
tgtatgaatctctatcgtaacttttcgactatcttctcttacatattttatgctaagggaatagactcttagttcttaatatatttcattttgatttcgt |
34314589 |
T |
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| Q |
207 |
aaaaagaaaaatagaaattaata--atatatactactctcttgtatcaagttgtcattattattcaagactttgtatattattgga |
290 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34314590 |
aaaa--aaaaataggaattaataatatatatactactctcttgtatcaagttgtcattattattcaagactttgtattttattgga |
34314673 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 10122493 - 10122456
Alignment:
| Q |
180 |
ttttaatatattccgttttgatttcttaaaaagaaaaa |
217 |
Q |
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| T |
10122493 |
ttttaatatattccattttgatttcttaaaaaaaaaaa |
10122456 |
T |
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