View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_115 (Length: 293)

Name: NF9361A_low_115
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_115
NF9361A_low_115
[»] chr4 (10 HSPs)
chr4 (179-293)||(37180040-37180154)
chr4 (179-293)||(37181583-37181697)
chr4 (179-293)||(37189700-37189814)
chr4 (20-116)||(37180220-37180316)
chr4 (183-293)||(37187723-37187833)
chr4 (20-116)||(37189538-37189634)
chr4 (183-231)||(38704220-38704268)
chr4 (44-116)||(37181445-37181517)
chr4 (28-115)||(37187901-37187988)
chr4 (44-116)||(38704293-38704369)
[»] chr5 (2 HSPs)
chr5 (201-268)||(27096701-27096768)
chr5 (201-268)||(27103004-27103071)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 179 - 293
Target Start/End: Complemental strand, 37180154 - 37180040
Alignment:
Q  179 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180154 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37180055  T
Q  279 acaaatattccaaca 293  Q
    |||||||||||||||    
T  37180054 acaaatattccaaca 37180040  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 37181583 - 37181697
Alignment:
Q  179 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181583 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37181682  T
Q  279 acaaatattccaaca 293  Q
    |||||||||||||||    
T  37181683 acaaatattccaaca 37181697  T

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Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 37189700 - 37189814
Alignment:
Q  179 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189700 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37189799  T
Q  279 acaaatattccaaca 293  Q
    |||||||||||||||    
T  37189800 acaaatattccaaca 37189814  T

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Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 37180316 - 37180220
Alignment:
Q  20 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37180316 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37180220  T

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Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 183 - 293
Target Start/End: Complemental strand, 37187833 - 37187723
Alignment:
Q  183 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaa 282  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  37187833 ccttcaattccaaatatgcctcagggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaa 37187734  T
Q  283 atattccaaca 293  Q
    || ||||||||    
T  37187733 attttccaaca 37187723  T

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Target: chr4; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 37189538 - 37189634
Alignment:
Q  20 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37189538 catcaaactatcaatggcaatattcaaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37189634  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 38704268 - 38704220
Alignment:
Q  183 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704268 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 38704220  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 37181445 - 37181517
Alignment:
Q  44 caaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 116  Q
    ||||||||||||  ||||||||||||| ||||| ||||| |||| |||||||||||||||||| |||||||||    
T  37181445 caaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatcttttg 37181517  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 37187988 - 37187901
Alignment:
Q  28 tatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatctttt 115  Q
    |||||||||||  |  |||||||||||||| | |||||||||| |||||||| || |||| |||||||||||||||||| ||||||||    
T  37187988 tatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatctttt 37187901  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 38704369 - 38704293
Alignment:
Q  44 caaatccttcatcacaactt----tacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 116  Q
    ||||||||| ||||||||||    ||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  38704369 caaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttg 38704293  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 27096701 - 27096768
Alignment:
Q  201 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcc 268  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27096701 cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcc 27096768  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 27103004 - 27103071
Alignment:
Q  201 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcc 268  Q
    |||||||| ||| |||||||||||||||| ||||||||  ||||||| ||||||||||||||||||||    
T  27103004 cctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctcactatgccaccacttcc 27103071  T

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