View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_116 (Length: 292)
Name: NF9361A_low_116
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_116 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0246 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 51254882 - 51254591
Alignment:
| Q |
1 |
tcttgcacctgcgcaaccacatcagcaaaaagctccaacgcttcaacagctctcttcctagctccaaccgcaaccatagctcttctctcagcatccaacc |
100 |
Q |
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| T |
51254882 |
tcttgcacctgcgcaaccacatcagcaaaaagctccaacgcttcaacagctctcttcctagctccaaccgcaaccatagctcttctctcagcatccaacc |
51254783 |
T |
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| Q |
101 |
gactcgcagcagccgatctagtcaaagtattcgccgaaatctgcgcggccgccgcaagaaccttattagcatgaaaatcaataccactccgatcaatttt |
200 |
Q |
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| T |
51254782 |
gaatcgcagcagccgatctagtcaaagtattcgccgaaatctgcgcggccgccgcaagaaccttattagcatgaaaatcaataccactccgatcaatttt |
51254683 |
T |
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| Q |
201 |
gaagtaagagaaattaggatcggcgcaaggaggacaaaggaaagcgaaatccggcgtggacgaaggaagaacacaagatcgatgagcaattg |
292 |
Q |
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| T |
51254682 |
gaagtaagagaaattaggatcggcgcaaggaggacaaaggaaagcgaaatccggcgtggacgaaggaagaacacaagatcgatgagcaattg |
51254591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 113 - 292
Target Start/End: Complemental strand, 12109 - 11930
Alignment:
| Q |
113 |
ccgatctagtcaaagtattcgccgaaatctgcgcggccgccgcaagaaccttattagcatgaaaatcaataccactccgatcaattttgaagtaagagaa |
212 |
Q |
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| T |
12109 |
ccgatctagtcaaagtattagccaaaatctctgcggcggccgcaagaaccttattagcatgaaattcaataccactccgaacaattttgaagtaagagaa |
12010 |
T |
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| Q |
213 |
attaggatcggcgcaaggaggacaaaggaaagcgaaatccggcgtggacgaaggaagaacacaagatcgatgagcaattg |
292 |
Q |
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| T |
12009 |
tttaggatcggcgtaaggaggacaaaggaaagcgaaatcaggcgtcgaagaaggaagaacacgagatcgatgagtaattg |
11930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 12151 - 12111
Alignment:
| Q |
57 |
cctagctccaaccgcaaccatagctcttctctcagcatcca |
97 |
Q |
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| T |
12151 |
cctagctccaaccgtaaccataactcttctctcagcatcca |
12111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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