View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_126 (Length: 286)

Name: NF9361A_low_126
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_126
NF9361A_low_126
[»] chr6 (3 HSPs)
chr6 (13-255)||(22081773-22082015)
chr6 (111-212)||(20909717-20909818)
chr6 (111-212)||(20924165-20924266)
[»] chr4 (1 HSPs)
chr4 (4-255)||(37617957-37618204)
[»] chr3 (2 HSPs)
chr3 (161-255)||(19766924-19767018)
chr3 (4-99)||(52127916-52128007)
[»] chr5 (1 HSPs)
chr5 (154-255)||(40164024-40164124)
[»] chr7 (2 HSPs)
chr7 (4-99)||(24760481-24760572)
chr7 (110-212)||(11504533-11504635)
[»] chr8 (1 HSPs)
chr8 (111-211)||(42312832-42312932)
[»] chr1 (1 HSPs)
chr1 (111-212)||(41326611-41326712)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 22081773 - 22082015
Alignment:
Q  13 gttacaaaatgagtttgaattaagatgaattgggaacattgaattatcttgcatattgattccttttagggtttggtgttctatgtttnnnnnnntcaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  22081773 gttacaaaatgagtttgaattaagatgaattgggaacattgaattatcttgcatattgattccttttagggtttggtgttctatgtttaaaaaaatcaaa 22081872  T
Q  113 accacttacataggatgaagtaggagtgttagaatcaagcgttgtttgacatgaagttatctttgtagtcaaagtcgacttacttgatgccactgtgttt 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22081873 accacttacataggatgaagtaggagttttagaatcaagcgttgtttgacatgaagttatctttgtagtcaaagtcgacttacttgatgccactgtgttt 22081972  T
Q  213 tctattatgttactttatcagattttatggattaattatttcc 255  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22081973 tctattatgttactttatcagattttatggattaattatttcc 22082015  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 20909818 - 20909717
Alignment:
Q  111 aaaccacttacataggatgaagtaggagtgttagaatcaagcgttgtttgacatgaagttatctttgtagtcaaagtcgacttacttgatgccactgtgt 210  Q
    ||||||||  |||| ||||||| | |||| ||||||||||| |||||| |||| |||| | ||| |||| |  ||| || ||||||||||||||||||||    
T  20909818 aaaccactgccatatgatgaagcaagagttttagaatcaagtgttgttcgacaggaagatctctctgtaatagaagacgtcttacttgatgccactgtgt 20909719  T
Q  211 tt 212  Q
    ||    
T  20909718 tt 20909717  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 20924266 - 20924165
Alignment:
Q  111 aaaccacttacataggatgaagtaggagtgttagaatcaagcgttgtttgacatgaagttatctttgtagtcaaagtcgacttacttgatgccactgtgt 210  Q
    ||||||||  |||| ||||||| | |||| ||||||||||| |||||| |||| |||| | ||| |||| |  ||| || ||||||||||||||||||||    
T  20924266 aaaccactgccatatgatgaagcaagagttttagaatcaagtgttgttcgacaggaagatctctctgtaatagaagacgtcttacttgatgccactgtgt 20924167  T
Q  211 tt 212  Q
    ||    
T  20924166 tt 20924165  T

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Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 255
Target Start/End: Complemental strand, 37618204 - 37617957
Alignment:
Q  4 gagtatggagttacaaaatgagtttgaattaagatgaattgggaacattgaattatcttgcatattgattccttttagggtttggtgttctatgtttnnn 103  Q
    |||| ||| ||||||||||||| |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  37618204 gagtctggtgttacaaaatgagcttgaa----gatgaattgggaacattgaattatcttgcatattgattccttttagggtttggtgttctatgtttaaa 37618109  T
Q  104 nnnntcaaaaccacttacataggatgaagtaggagtgttagaatcaagcgttgtttgacatgaagttatctttgtagtcaaagtcgacttacttgatgcc 203  Q
        ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37618108 aaaatcaaaaccacttacataggatgaagaaggagttttagaatcaagcgttgtttgacatgaagttatctttgtagtcaaagtcgacttacttgatgcc 37618009  T
Q  204 actgtgttttctattatgttactttatcagattttatggattaattatttcc 255  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37618008 actgtgttttctattatgttactttatcagattttatggtttaattatttcc 37617957  T

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Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 19766924 - 19767018
Alignment:
Q  161 acatgaagttatctttgtagtcaaagtcgacttacttgatgccactgtgttttctattatgttactttatcagattttatggattaattatttcc 255  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19766924 acatggagttatctttgtagtcaaagtcgacttacttgatgccactgtgttttctattatgttactttatcagattttatggattaattatttcc 19767018  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 52127916 - 52128007
Alignment:
Q  4 gagtatggagttacaaaatgagtttgaattaagatgaattgggaacattgaattatcttgcatattgattccttttagggtttggtgttctatgtt 99  Q
    |||| ||| ||||||||||||| |||||    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||    
T  52127916 gagtctggtgttacaaaatgagcttgaa----gatgaattgggaacattgaattcacttgcattttgattccttttagggtttggtgttctatgtt 52128007  T

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Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 154 - 255
Target Start/End: Original strand, 40164024 - 40164124
Alignment:
Q  154 ttgtttgacatgaagttatctttgtagtcaaagtcgacttacttgatgccactgtgttttctattatgttactttatcagattttatggattaattattt 253  Q
    |||||||||||||| ||| ||||| |||||||||  ||||||||||||||| ||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  40164024 ttgtttgacatgaaattagctttgcagtcaaagtgaacttacttgatgccattgtgttttccattatgttactttatcatattttat-gattaattattt 40164122  T
Q  254 cc 255  Q
    ||    
T  40164123 cc 40164124  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 24760481 - 24760572
Alignment:
Q  4 gagtatggagttacaaaatgagtttgaattaagatgaattgggaacattgaattatcttgcatattgattccttttagggtttggtgttctatgtt 99  Q
    |||| ||| ||||||||||||| |||||    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||    
T  24760481 gagtctggtgttacaaaatgagcttgaa----gatgaattgggaacattgaattcacttgcattttgattccttttagggtttggtgttctatgtt 24760572  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 11504533 - 11504635
Alignment:
Q  110 aaaaccacttacataggatgaagtaggagtgttagaatcaagcgttgtttgacatgaagttatctttgtagtcaaagtcgacttacttgatgccactgtg 209  Q
    |||||||||  |||| ||||||| | |||| ||||||||||| |||||||||||||||| |||||||||| || ||| || || |||||||||||||| |    
T  11504533 aaaaccactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaatcgaagacgtctcacttgatgccactgcg 11504632  T
Q  210 ttt 212  Q
    |||    
T  11504633 ttt 11504635  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 42312932 - 42312832
Alignment:
Q  111 aaaccacttacataggatgaagtaggagtgttagaatcaagcgttgtttgacatgaagttatctttgtagtcaaagtcgacttacttgatgccactgtgt 210  Q
    ||||||||  |||| ||||||| | |||| ||||||||||| |||||| |||| |||| | ||| |||| || ||| || ||||||||||||||||||||    
T  42312932 aaaccactgccatacgatgaagcaagagtattagaatcaagtgttgttcgacaggaagatctctctgtaatcgaagacgtcttacttgatgccactgtgt 42312833  T
Q  211 t 211  Q
    |    
T  42312832 t 42312832  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 41326712 - 41326611
Alignment:
Q  111 aaaccacttacataggatgaagtaggagtgttagaatcaagcgttgtttgacatgaagttatctttgtagtcaaagtcgacttacttgatgccactgtgt 210  Q
    ||||||||  |||| ||||||| | |||| |||||||||||  ||||| |||| |||| | ||| |||| || ||| || ||||||||||||||||||||    
T  41326712 aaaccactgccatatgatgaagcaagagttttagaatcaagttttgttcgacaggaagatctctctgtaatcgaagacgtcttacttgatgccactgtgt 41326613  T
Q  211 tt 212  Q
    ||    
T  41326612 tt 41326611  T

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