View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_136 (Length: 271)
Name: NF9361A_low_136
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_136 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 5035460 - 5035724
Alignment:
| Q |
7 |
tttggtgttcagcataatcagaaattgtggaagatggctttaatctcaagtacgaggagtgaagacattctatcaaatttcgaatgaattgttttatgta |
106 |
Q |
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| T |
5035460 |
tttggtgttcagcataatcagaaattgtggaagatggctttaatctcaagtacgaggagtgaagacattctatcaaattttgaatgaattgttttatgta |
5035559 |
T |
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| Q |
107 |
atttaataacttttatagcagtgtttgtgaaataaaaaacttacaaagcacatatattaaagannnnnnnnaaggatatctattaaagaattaaaaaatt |
206 |
Q |
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| T |
5035560 |
atttaataacttttataacagagtttgtgaaataaaaaacttacaaagcacatatattaaagattttttttaaggatatctattaaagaattaaaaaatt |
5035659 |
T |
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| Q |
207 |
cacttcacaaggattcaactcaaatatcacaataatctttacttgagttatgttgttggtggaaa |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5035660 |
cacttcacaaggattcaactcaaatatcacaataatctttacttgagttatgttgttggtggaaa |
5035724 |
T |
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