View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_14 (Length: 474)
Name: NF9361A_low_14
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 474
Target Start/End: Complemental strand, 46643602 - 46643147
Alignment:
| Q |
7 |
aatttcacctaaaacacgtacgtatatgacatgaccaagtaaacactacctctgaatttgaaagaacaaaaaagaaaagaataaaatattccaaggccaa |
106 |
Q |
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| T |
46643602 |
aatttcacctaaaacacgtacgtatatgacatgatcaagtaaacactccctctgaatttgaaagaacaaaaaagaaaagaataaaatgttccaag----- |
46643508 |
T |
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| Q |
107 |
gctcttatctcatcagagataatggtggtaagctgccnnnnnnnnnnnnnnnnnnnntggacaagaaggtggtgttggcggtagagttacaaaagaacaa |
206 |
Q |
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| T |
46643507 |
-ctcttatctcatcagagataatggtggtaagctgccggaggaggaggagg------tggacaagaaggtggtggtggcggtagagttacaaaagaacaa |
46643415 |
T |
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| Q |
207 |
ccaacaccagtacaatgaacaggatgttcataaaaagcatcacacccatgactcgatctttggaaatgcatatgaggaatacaattctttgtatcatcct |
306 |
Q |
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| T |
46643414 |
ccaacaccagtacaatgaacaggatgttcataaaaagcatcacacccatgactcgatctttggaaatgcatatgaggaatacaattctttgtatcatcct |
46643315 |
T |
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| Q |
307 |
tatcatccaacttaacacaaatctctgattcaccactaaagtaattatacgaatacgtcaaattctccaaccttggcaatctacatatactctcaggaat |
406 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46643314 |
tatcatccaacttaacacaaatctctgattcaccactcaggtaattatacgaatacgttaaattcttcaaccttggcaatctacatatactctcaggaat |
46643215 |
T |
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| Q |
407 |
aacaccagaaaatttattatgtgccacattcaactactccaaacttttcatgccactgatactttcag |
474 |
Q |
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| T |
46643214 |
aacaccagaaaatttattatgtgccacattcaactgctccaaacttttcattccactgatactttcag |
46643147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 46640749 - 46640709
Alignment:
| Q |
103 |
ccaagctcttatctcatcagagataatggtggtaagctgcc |
143 |
Q |
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| T |
46640749 |
ccaagctcttgtctcatcagagataatggtagtaagttgcc |
46640709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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