View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_146 (Length: 265)
Name: NF9361A_low_146
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_146 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 34819925 - 34819674
Alignment:
| Q |
1 |
gctaagagtgaccatcatctcgctgaggcagcatctttaaagaagaaagggaagagttatgaaggcgaggccaacaagaagaaggtcgagtgcgttcttg |
100 |
Q |
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| T |
34819925 |
gctaagattgaccatcaactcgttgaggcatgtcctttaaagaagaaagggaagagtgataaaggcgaggccaacaagaagaatgtcgagtgcgttcttg |
34819826 |
T |
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| Q |
101 |
aggttgagatcggcggctccttgtggaacaggaacttcgatcgtgctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
34819825 |
aggttgagatcggcggctccttgtggaacaggaacttcgatcgtgctggcttcgtgaaggatcatttcaacctttatgaagattttgaggcaacaaggaa |
34819726 |
T |
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| Q |
201 |
gtctaatcactccaatatgtttcatgatgctagtgtttcttgtttgcgctct |
252 |
Q |
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| T |
34819725 |
gtctaatcactccaatatgtttcatgatgctagtgtttcttgtttgcgctct |
34819674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 34820193 - 34820119
Alignment:
| Q |
9 |
tgaccatcatctcgctgaggcagcatctttaaagaagaaagggaagagttatgaaggcgaggccaacaagaagaa |
83 |
Q |
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| T |
34820193 |
tgaccatcaactcgctgaggcgtctcctttaaagaagaaagggaagagtgataaaggcgagacaaccaagaagaa |
34820119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 22080743 - 22080680
Alignment:
| Q |
146 |
ctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatca |
209 |
Q |
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| T |
22080743 |
ctggcttcgtgaaagatcatttcaaccttcctgaggattttgaggcagcgaggaagtctaatca |
22080680 |
T |
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