View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_152 (Length: 260)
Name: NF9361A_low_152
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_152 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 42239034 - 42239274
Alignment:
| Q |
18 |
gaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtcgcttatcttcttttgcagcacaactatgaaggatgactgaaaaaag |
117 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239034 |
gaaggaacaaataatggacgcaaatttttaagcaatgaagagcgtaaggccgtcgcttatcttcttttgcagcacaactatgaaggatgactgaaaaaag |
42239133 |
T |
|
| Q |
118 |
ggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239134 |
ggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatac |
42239233 |
T |
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| Q |
218 |
aaaaacaacaatttctgggcgaaaaagggttcaattttgat |
258 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |
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| T |
42239234 |
aaaaacaacaatttctgggcgaaaaaggattcaattttgat |
42239274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 1328432 - 1328656
Alignment:
| Q |
18 |
gaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtcgcttatcttcttttgcagcacaactatgaaggatgactgaaaaaag |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||||| ||| |||| |||||||||||| |
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| T |
1328432 |
gaaggaacagataatggacgcaagtttttaagcaacgaagagcgtaaggccattgctcatcttcttttgcagcacaaccatgtaggaagactgaaaaaag |
1328531 |
T |
|
| Q |
118 |
ggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatac |
217 |
Q |
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| T |
1328532 |
ggactagaaaattgattgcgtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagcaaaactca---caggagatgtgtctcatag |
1328628 |
T |
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| Q |
218 |
aaaaacaacaatttctgggcgaaaaagg |
245 |
Q |
| |
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|||||||||| || ||||||||||||| |
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| T |
1328629 |
gaaaacaacaaattgtgggcgaaaaagg |
1328656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 42541123 - 42540899
Alignment:
| Q |
18 |
gaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtcgcttatcttcttttgcagcacaactatgaaggatgactgaaaaaag |
117 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||| | ||| |||| |||||||||||| |
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| T |
42541123 |
gaaggaacagataatggacgcaagtttttaagcaacgaagagcgtaaggccattgctcatcttcttttgcagcacagccatgcaggaagactgaaaaaag |
42541024 |
T |
|
| Q |
118 |
ggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatac |
217 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42541023 |
ggactagaaaattgattgcgtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagcaaaactca---caggagatgtgtctcatag |
42540927 |
T |
|
| Q |
218 |
aaaaacaacaatttctgggcgaaaaagg |
245 |
Q |
| |
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|||||||||| || ||||||||||||| |
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| T |
42540926 |
gaaaacaacaaattgtgggcgaaaaagg |
42540899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 17649631 - 17649855
Alignment:
| Q |
18 |
gaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtcgcttatcttcttttgcagcacaactatgaaggatgactgaaaaaag |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||| | ||| | || |||||||||||| |
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| T |
17649631 |
gaaggaacagataatggacgcaagtttttaagcaacgaagagtgtaaggccgttgctcatcttcttttgcagcacagccatgcaagaagactgaaaaaag |
17649730 |
T |
|
| Q |
118 |
ggactagaaaattgattgtgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatac |
217 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| |
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| T |
17649731 |
ggactagaaaattgattgcgtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagaaaaactca---caggagatgtgtctcatag |
17649827 |
T |
|
| Q |
218 |
aaaaacaacaatttctgggcgaaaaagg |
245 |
Q |
| |
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|||||||||| || ||||||||||||| |
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| T |
17649828 |
gaaaacaacaaattgtgggcgaaaaagg |
17649855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 4745817 - 4745952
Alignment:
| Q |
18 |
gaaggaacaaataatggacgcaagtttttaagcaacgaagagcgtacggccgtcgcttatcttcttttgcagcacaactatgaaggatgactgaaaaaag |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||| | ||| |||| |||||||||||| |
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| T |
4745817 |
gaaggaacagataatggacgcaagtttttaagcaacgaagagcgtaaggccattgctcatcttcttttgcagcacagccatgcaggaagactgaaaaaag |
4745916 |
T |
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| Q |
118 |
ggactagaaaattgattgtgtcaatgtattcggtct |
153 |
Q |
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|||||||||||||||||| |||||||||||| |||| |
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|
| T |
4745917 |
ggactagaaaattgattgcgtcaatgtattcagtct |
4745952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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