View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_155 (Length: 260)
Name: NF9361A_low_155
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_155 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 45762632 - 45762850
Alignment:
| Q |
7 |
attatactgaacctttataattgtgttatgaggagtaatcaaactacactgatgcaatattacacaaatgttacattgttcaatattgttttagccaatt |
106 |
Q |
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| T |
45762632 |
attatcctgaacctttataattgtgttatgaggagtaatcaaactacactgatgcaatattacacaaatgttacatcgttcaatattgttttagccaatt |
45762731 |
T |
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| Q |
107 |
catattttccaaatttgtccttgtactataagtatatatcatcgatataaatttttacataaatctaaaatcatctcatagtttattgagacctcccaag |
206 |
Q |
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| T |
45762732 |
catattttccaaatttgtccttggactataagtatatatcatcgatataaatttttacataaatctaaaatcatctcatagtttattgagacctcccaag |
45762831 |
T |
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| Q |
207 |
atttagggtttatgcgctt |
225 |
Q |
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| T |
45762832 |
atttagggtttatgcgctt |
45762850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 29890059 - 29889984
Alignment:
| Q |
151 |
atataaatttttacataaatctaaaatcatctcatagtttattgagacctcccaagatttagggtttatgcgctttt |
227 |
Q |
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| T |
29890059 |
atataaatttttacgtaaatctaaaaccattt-atatgttattgagacctaccaagattaaaggtttatgcactttt |
29889984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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